name: Smudgeplot inference problem about: When there is a suspicious smudgeplot suggesting something wrong
About your genome
Tell us about your genome, so we understand why the smudgeplot seems to be wrong. Also please include the evidence you have (karyotype, inSitu...).
smudgeplot
Show us please the command you have used to generate the smudgeplot and the smudgeplot if possible. Tell us what looks suspicious on the smudgeplot and how do you expect it to look like?
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