name: Smudgeplot interpretation about: For interpretation problems of smudgeplot, send an issue by email if the data are sensitive
I have troubles understanding my smudgeplot. I have used follwing command to generate it
smudgeplot plot -i kmer_pairs_coverages_2.tsv -o my_org -t "Figure 1a: genome structure of X. odoratum" -L 40 -k 19
and it look like this:
(add smudgeplot)
Now, I (know/have indication) already of (genome size/number of chromosomes/ploidy/...) from (RADseq/flow cytometry/karyotypes/inSitu/...) data. This does not make sense together with the smudge because (it predicts unexpected ploidy/shows only one smudge/...).
How should I understand my smudgeplot?
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