show_boxpep: Plot monthly chlorophyll, secchi, or tn values values for a...

In tbep-tech/peptools: Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data

Plot monthly chlorophyll, secchi, or tn values values for a segment

Description

Plot monthly chlorophyl, secchi, or tn values values for a bay segment

Usage

show_boxpep(
  dat,
  param = c("chla", "sd", "tn"),
  yrsel = NULL,
  yrrng = NULL,
  ptsz = 0.5,
  bay_segment = c("1a", "1b", "2", "3"),
  trgs = NULL,
  family = NA,
  labelexp = TRUE,
  txtlab = TRUE
)

Arguments

dat	data frame of data returned by read_pepwq
param	chr string indicating which water quality value and appropriate threshold to plot, one of "chla" for chlorophyll, "sd" for secchi depth, or "tn" for total nitrogen
yrsel	numeric for year to emphasize, shown as separate red points on the plot
yrrng	numeric vector indicating min, max years to include
ptsz	numeric indicating point size of observations not in yrsel
bay_segment	chr string for the bay segment, one of "1a", "1b", "2", or "3"
trgs	optional data.frame for annual bay segment water quality targets, defaults to peptargets
family	optional chr string indicating font family for text labels
labelexp	logical indicating if y axis and target labels are plotted as expressions, default TRUE
txtlab	logical indicating if a text label for the target value is shown in the plot

Details

Points not included in yrsel are plotted over the box plots using position_jitter. Use ptsz = -1 to suppress.

Value

A ggplot object

Examples

show_boxpep(rawdat, bay_segment = '1a')

tbep-tech/peptools documentation built on March 13, 2024, 4:22 p.m.