read_formbenthic: Format benthic data for the Tampa Bay Benthic Index

In tbep-tech/tbeptools: Data and Indicators for the Tampa Bay Estuary Program

Format benthic data for the Tampa Bay Benthic Index

Description

Format benthic data for the Tampa Bay Benthic Index

Usage

read_formbenthic(pathin)

Arguments

pathin

A path to unzipped csv files with base tables used to calculate benthic index

Details

Function is used internally within read_importbenthic

Value

A nested tibble of station, field sample, and taxa data

Examples

## Not run: 

# location to download data
path <- '~/Desktop/benthic.zip'

# download
urlin1 <- 'https://epcbocc.sharepoint.com/:x:/s/Share/'
urlin2 <- 'EQUCWBuwCNdGuMREYAyAD1gBKC98mYtCHMWX0FYLrbT4KA?e=nDfnnQ'
urlin <- paste0(urlin1, urlin2, '&download=1')
read_dlcurrent(path, download_latest = TRUE, urlin = urlin)

# unzip
tmppth <- tempfile()
utils::unzip(path, exdir = tmppth, overwrite = TRUE)

# format benthic data
read_formbenthic(pathin = tmppth)

# remove temporary path
unlink(tmppth, recursive = TRUE)


## End(Not run)

tbep-tech/tbeptools documentation built on April 13, 2025, 4:50 p.m.