tissue_mechanical_analysis_list: tissue_mechanical_analysis_list

In tbgitoo/textureAnalyzerGels: Reading and analyzing texture analyzer data

tissue_mechanical_analysis_list

Description

Analysis of list of compression curves, for example from biological tissues. This function applies tissue_mechanical_analysis to each compression curve and collects the results

Usage

tissue_mechanical_analysis_list(file_info,data_list,start_height_column="start_height_mm",approximate_gel_touch_point_column="approximate_gel_touch_point",...)

Arguments

file_info	Description of the compression curves. This is a dataframe, which needs to contain at least the columns with names given by the arguments start_height_column and approximate_gel_touch_point_column, but usually contains more information such as the fabrication conditions. file_info needs to contain as many lines as there are elements in data_list
data_list	List of compression curves, typically produced by read_mecmesin_tab_list
start_height_column	Name of the starting height column in file_info. This column describes the starting height of the chuck at the beginning of compression, in millimeters
approximate_gel_touch_point_column	Name of the column in file_info that contains a manual estimation of the approximate gel touchpoint, in mm.
...	Possibility to pass down further arguments to tissue_mechanical_analysis, used internally

Value

A list with as many elements as there are lines file_info. Each of these elements is the output of tissue_mechanical_analysis. As the output of tissue_mechanical_analysis is a list itself, the return value is a list of lists.

Author(s)

Thomas Braschler

See Also

tissue_mechanical_analysis, used internally

tbgitoo/textureAnalyzerGels documentation built on March 30, 2022, 4:53 a.m.