Files in tdhock/PeakSegDP
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/PeakSegDP.R
R/PoissonLoss.R
R/cDPA.R
README.org
build.sh
data/H3K36me3.AM.immune.19.RData
data/H3K36me3.TDH.other.chunk3.cluster4.RData
data/H3K4me3.TDH.immune.chunk12.cluster4.RData
data/chr11ChIPseq.RData
data/chr11first.RData
man/GeomTallRect.Rd
man/H3K36me3.AM.immune.19.Rd
man/H3K36me3.TDH.other.chunk3.cluster4.Rd
man/H3K4me3.TDH.immune.chunk12.cluster4.Rd
man/PeakSegDP.Rd
man/PoissonLoss.Rd
man/cDPA.Rd
man/calc.grad.list.Rd
man/calc.loss.from.lp.list.Rd
man/calc.loss.list.Rd
man/chr11ChIPseq.Rd
man/chr11first.Rd
man/derivs.Rd
man/getPath.Rd
man/phi.list.Rd
man/regression.funs.Rd
src/cDPA.c
src/cDPA.h
src/interface.c
tests/testthat.R
tests/testthat/test-PoissonLoss.R
tests/testthat/test-small.R
tests/testthat/test-trivial.R
