plotMakefile: plotMakefile

In tdhock/plotMakefile: Parse and plot Makefiles

Description

plot a Makefile using library(diagram).

Usage

plotMakefile(makefile, sort.fun = sortDefault, colors = NULL, 
    categories = NULL, curve = 0, segment.from = 0.1, segment.to = 0.9, 
    box.type = "none", legend.x = "bottom", ...)

Arguments

makefile	Path to the Makefile.
sort.fun	Function that takes a numeric vector of vertical/y values of the file names to plot, and returns the files names in the order they should appear on the plot.
colors	Named character vector that maps categories to plot colors.
categories	Named character vector that maps each category to a regular expression for matching filenames.
curve	passed to plotmat.
segment.from	passed to plotmat.
segment.to	passed to plotmat.
box.type	passed to plotmat.
legend.x	passed to legend as x.
...	passed to plotmat.

Value

Return value of plotmat, plus colors used in the legend, and categories for the text labels.

Author(s)

Toby Dylan Hocking

Examples

## Default sorting may result in a plot with edge crossings.
f <- system.file(file.path("Makefiles", "custom-capture.mk"),
                 package="plotMakefile")
plotMakefile(f)
## You can adjust this by providing a custom sort.fun, and you can
## adjust other plotmat parameters such as main (plot title).
sorter <- sortValues("table-variants.R", "trios.RData",
                     "sample.list.RData", "table-noise.R")
plotMakefile(f, sort.fun=sorter,
             main="custom capture variant detection project")
## If you want to just plot everything in black without a legend,
## specify that all files belong to the same category.
plotMakefile(f, categories=".*")

tdhock/plotMakefile documentation built on May 31, 2019, 7:38 a.m.