README.md

In tengmx/ComplexDiff: Differential Binding Estimation for Protein Complexes

Differential Binding Estimation for Protein Complexes

Introduction

This package provides functions to normalize and estimate differential DNA bindings by protein complexes using ChIP-Seq data.

Installation

First, dependency packages should be pre-installed in R.

source("https://bioconductor.org/biocLite.R")
biocLite(c("matrixStats","IRanges","GenomeInfoDb","GenomicRanges","Rsamtools",
    "rtracklayer","Rsubread","bumphunter","DESeq2","limma","genefilter"))

Then, R-package ComplexDiff can be installed.

library(devtools)
install_github("tengmx/ComplexDiff")

After installation, the package can be loaded into R.

library(ComplexDiff)

tengmx/ComplexDiff documentation built on May 31, 2019, 8:34 a.m.