prep_project_data: prep_project_data

In teofiln/gene.editing.dash: VOR Gene Editing Dashboard

Description

prepare an RDS file for loading into the data.

Requirements:

• RDS

• A list of 6 tables corresponding to:

  1. Quality control table (QCTable)

  2. Editing frequency table (EditingFreq)

  3. Indel frequency table (IndelFreq)

  4. CRISPR summary table (CRISPRSummary)

  5. Sample metadata table (SampleMeta)

  6. Allele frequency and Sequence alignment table (AlleleAlignFreq)

• The order matters

• Currently, no checks are made for table composition and column types, so be sure to the table conform to original examples

Procedure:

1. Load the RDS list of tables

2. Rename the tables

3. Format the column names into BigCamel

4. Save to a serialized, fast, QC binary file for faster reading in-app

Usage

prep_project_data(project_rds_path, output_qs_path)

Arguments

project_rds_path	character, path to the project data RDS file
output_qs_path	character, path for the output serialized qs file

teofiln/gene.editing.dash documentation built on Feb. 21, 2022, 12:59 a.m.