QDNAseq.hg19-package: Package QDNAseq.hg19

In tgac-vumc/QDNAseq.hg19: QDNAseq bin annotation for hg19

Description

This package provides QDNAseq binannotations for the mouse genome build hg19 for bin sizes 1, 5, 10, 15, 30, 50, 100, 500 and 1000 kbp (kilobasepair).

The datasets are named as follows:

hg19.1kbp.SR50
hg19.5kbp.SR50
hg19.10kbp.SR50
hg19.15kbp.SR50
hg19.30kbp.SR50
hg19.50kbp.SR50
hg19.100kbp.SR50
hg19.500kbp.SR50
hg19.1000kbp.SR50

License

This package is licensed under GPL.

Author(s)

Daoud Sie

Examples

data("hg19.30kbp.SR50")
assign("bins", get("hg19.30kbp.SR50"))
## Not run: readCounts <- binReadCounts(bins=bins, path="./bam")

# or

bins <- getBinAnnotations(binSize=30, genome="hg19")
## Not run: readCounts <- binReadCounts(bins=bins, path="./bam")

tgac-vumc/QDNAseq.hg19 documentation built on May 31, 2019, 9 a.m.