QDNAseq.mm10-package: Package QDNAseq.mm10

In tgac-vumc/QDNAseq.mm10: Bin annotation mm10

Description

This package provides QDNAseq binannotations for the mouse genome build mm10 for bin sizes 1, 5, 10, 15, 30, 50, 100, 500 and 1000 kbp (kilobasepair).

The datasets are named as follows:

mm10.1kbp.SR50
mm10.5kbp.SR50
mm10.10kbp.SR50
mm10.15kbp.SR50
mm10.30kbp.SR50
mm10.50kbp.SR50
mm10.100kbp.SR50
mm10.500kbp.SR50
mm10.1000kbp.SR50

License

This package is licensed under GPL.

Author(s)

Daoud Sie

Examples

data("mm10.30kbp.SR50")
assign("bins", get("mm10.30kbp.SR50"))
## Not run: readCounts <- binReadCounts(bins=bins, path="./bam")

# or

bins <- getBinAnnotations(binSize=30, genome="mm10")
## Not run: readCounts <- binReadCounts(bins=bins, path="./bam")

tgac-vumc/QDNAseq.mm10 documentation built on May 31, 2019, 9 a.m.