WECCA.heatmap: Heatmap plotting with a chromosome indicator bar added.
In tgac-vumc/WECCA: Weighted clustering of array CGH data

Description Usage Arguments Details Value Author(s) See Also Examples

A heatmap generation of the WECCA clustering with chromosome info color-coded.

1	WECCA.heatmap(cghdata.regioned, dendrogram, ...)

`cghdata.regioned`	A `list`-object as returned by the function `regioning`.
`dendrogram`	Determines if and how the row dendrogram should be computed and reordered. Should be a dendrogram as returned by the function `WECCAsc` or `WECCAhc`.
`...`	...

This function is merely a thin wrapper to the heatmap function. It adds a color bar with chromosome information to the heatmap. Note that hard calls are used for heatmap plotting.

See heatmap.

Wessel N. van Wieringen: w.vanwieringen@vumc.nl

heatmap, regioning, WECCAsc, WECCAhc.

# generate object of class
data(WiltingCalled)

# make region data (soft and hard calls)
WiltingRegioned <- regioning(WiltingCalled)

# clustering with soft.calls
dendrogram <- WECCAsc(WiltingRegioned)

# generate a heatmap of the found clustering
WECCA.heatmap(WiltingRegioned, dendrogram)