getCmap: Download CMAP data
In tgirke/longevityTools: Analysis tools for longevity research

Description Usage Arguments Details Value Author(s) Examples

The getCmap function downloads the CMAP rank matrix along with the compound annotations, and getCmapCEL downloads the corresponding 7,056 CEL files.

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getCmap(rerun = TRUE)

getCmapCEL(rerun = TRUE)

rerun

If rerun set to TRUE, the function will perform the download, while FALSE returns a usage message.

The functions will write the downloaded files to a data directory within the present workding directory of the user's R session. This data directory plus a data/CEL sub-directory need to be created by the user prior to running the download functions.

Files written to disk.

Thomas Girke

## Not run: 
## Downloads cmap rank matrix and compound annotation files
getCmap(rerun=TRUE)


## Downloads cmap CEL files (take some time!)
getCmapCEL(rerun=TRUE)


## End(Not run)