getCmap: Download CMAP data

Description Usage Arguments Details Value Author(s) Examples

Description

The getCmap function downloads the CMAP rank matrix along with the compound annotations, and getCmapCEL downloads the corresponding 7,056 CEL files.

Usage

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getCmap(rerun = TRUE)

getCmapCEL(rerun = TRUE)

Arguments

rerun

If rerun set to TRUE, the function will perform the download, while FALSE returns a usage message.

Details

The functions will write the downloaded files to a data directory within the present workding directory of the user's R session. This data directory plus a data/CEL sub-directory need to be created by the user prior to running the download functions.

Value

Files written to disk.

Author(s)

Thomas Girke

Examples

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## Not run: 
## Downloads cmap rank matrix and compound annotation files
getCmap(rerun=TRUE)


## Downloads cmap CEL files (take some time!)
getCmapCEL(rerun=TRUE)


## End(Not run)

tgirke/longevityTools documentation built on May 31, 2019, 9:07 a.m.