R/data.R

In thanhbuu04/SCTCwhatateam: R package motivated by the SCTC Dream Challenges

#' Data given from the SCTC Dream Challenges
#'
#' Data given from the SCTC Dream Challenges
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"bdtnp"

#' Data given from the SCTC Dream Challenges
#'
#' Data given from the SCTC Dream Challenges
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"binarized_bdtnp"


#' Data given from the SCTC Dream Challenges
#'
#' The binarized single-cell RNA sequencing data
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"dge_binarized_distMap"



#' Data given from the SCTC Dream Challenges
#'
#' The normalized single-cell RNA sequencing data
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"dge_normalized"

#' Data given from the SCTC Dream Challenges
#'
#' The raw single-cell RNA sequencing data
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"dge_raw"


#' Data given from the SCTC Dream Challenges
#'
#' The distance between genes after using DREMI by Smita et al.
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"dremi"

#' Data given from the SCTC Dream Challenges
#'
#' The distance between genes after using MAGIC to adjust for dropout events
#'
#' @format A data frame with 3039 rows for cells and 84 columns for genes
"Eucl"

#' Data given from the SCTC Dream Challenges
#'
#' One half of Drosophila embryo has 3039 cells places as x, y and z for a total of 3039 embryo locations rows and a total of 3039*3 coordinates
#'
#' @format A data frame with 3039 rows for cells and 3 columns for coordinations
"geometry"

#' Data given from the SCTC Dream Challenges
#'
#' Gene determinants of Dorsal ectoderm
#'
#' @format A set of 9 genes markers for Dorsal ectoderm
"Dorsal_ectoderm"

#' Data given from the SCTC Dream Challenges
#'
#' A set of 84 genes markers provided by the Dream Challenges
#'
#' @format 84-gene set
"genes84"

#' Data given from the SCTC Dream Challenges
#'
#' Gene determinants of Mesoderm
#'
#' @format A set of 13 genes markers for Mesoderm
"Mesoderm"

#' Data given from the SCTC Dream Challenges
#'
#' Data given from the SCTC Dream Challenges
#'
#' @format A set of 9 genes markers for Neurectoderm
"Neurectoderm"

#' Data given from the SCTC Dream Challenges
#'
#' Total number of genes used to detect locations
#'
#' @format A total number of genes used to detect locations
"NoOfGenes"


#' Data given from the SCTC Dream Challenges
#'
#' Gene determinants of Pole cells
#'
#' @format 1 genes markers for Pole cells
"Pole_cells"


#' Data given from the SCTC Dream Challenges
#'
#' Gene determinants of Yolk cells
#'
#' @format A set of 7 genes markers for Yolk cells
"Yolk_cells"#' Data given from the SCTC Dream Challenges
#'
#' Gene determinants of Yolk cells
#'
#' @format A set of 7 genes markers for Yolk cells
"Yolk_cells"