Man pages for theMILOlab/SPATAImmune
What the Package Does (One Line, Title Case)
| addReArrangmentMatrix | addReArrangmentMatrix |
| check.SPATA | check.SPATA |
| create.IAF | create.IAF |
| GetClonalityAnalysis | GetClonalityAnalysis |
| GetColors | GetVDJ |
| getSpatialRegression | getSpatialRegression |
| GetSPTCR | GetSPTCR |
| GetVDJ | GetVDJ |
| hlpFlattenDF | hlpFlattenDF |
| hlpList2Array | hlpList2Array |
| import.sam.files | import.sam.files |
| ImportSPTCRseq | ImportSPTCRseq |
| ImportVDJ | ImportVDJ -Deprecated - |
| modelAA2vec | modelAA2vec -Deprecated - |
| plot3DClonality2ST | plot3DClonality2ST |
| plotAAlogo | plotAAlogo |
| plotAggregatedDimred | plotAggregatedDimred |
| plotBarCompare | plotBarCompare |
| plotDonut | plot.donut |
| plotQualityIgBlast | plotQualityIgBlast |
| plotRiver | River Plot |
| plotVDJArrangments | plotVDJArrangments |
| plotVDJCirclize | plotVDJCirclize |
| readsamfiles | readsamfiles |
| runClonalityAnalysis | runClonalityAnalysis -Deprecated - |
| runKmers | runKmers -Deprecated - |
| runSpaceXR | runSpaceXR |
| runSPTCRdeep | runSPTCRdeep -Deprecated - |
| verbose.text | verbose.text |
