copy: Copy files into docker image

In thebioengineer/dockyard: Provide tools for interfacing and building docker containers in R

Description

Command to copy files in the docker image during building the image.

Command to copy files from a URL into the docker image during building the image.

Command to ADd files from local computer into the docker image during building the image.

Usage

copy(df, source, dir)

copy_from_url(df, source, file)

add(df, source, dir)

Arguments

df	a dockerfile object from 'dockerfile()'
source	file to be copied from your local computer or URL to use
dir	location the file is to be copied to
file	the output file to save the URL document as

See Also

Other dockerfile: build, cmd, expose, from, install_r_lib_version, install_r_lib, install, run, update, write_dockerfile

Other dockerfile: build, cmd, expose, from, install_r_lib_version, install_r_lib, install, run, update, write_dockerfile

Other dockerfile: build, cmd, expose, from, install_r_lib_version, install_r_lib, install, run, update, write_dockerfile

Examples

# Start a dockerfile based off of the rocker/shiny image to generate a
# shiny server using R version 3.6.1, update all existing software
# and install git and curl. Then initialize Rstudio server, and copy in a config file

dockerfile() %>%
 from("rocker/r-ver:devel") %>%
 update() %>%
 install("sudo","gdebi","pandoc","pandoc-citeproc",
         "libcurl4-gnutls-dev","libcairo2-dev",
         "libxtdev","wget") %>%
  run("wget --no-verbose
       https://download3.rstudio.org/ubuntu-14.04/x86_64/VERSION
       -O version.txt") %>%
  run("VERSION=$(cat version.txt)") %>%
  run("wget --no-verbose
       https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-$VERSION-amd64.deb
        -O ss-latest.deb") %>%
  run("gdebi -n ss-latest.deb") %>%
  run("rm -f version.txt ss-latest.deb") %>%
  run(". /etc/environment") %>%
  install_r_lib("shiny","rmarkdown") %>%
  run("cp -R /usr/local/lib/R/site-library/shiny/examples/* /srv/shiny-server/") %>%
  expose(3838) %>%
  copy("shiny-server.sh", "/usr/bin/shiny-server.sh")

# Start a dockerfile based off of the rocker/shiny image to generate a
# shiny server using R version 3.6.1, update all existing software
# and install git and curl. Then initialize Rstudio server, and copy in a config file

dockerfile() %>%
 from("rocker/r-ver:devel") %>%
 update() %>%
 install("sudo","gdebi","pandoc","pandoc-citeproc",
         "libcurl4-gnutls-dev","libcairo2-dev",
         "libxtdev","wget","curl") %>%
  run("wget --no-verbose
      https://download3.rstudio.org/ubuntu-14.04/x86_64/VERSION
       -O version.txt") %>%
  run("VERSION=$(cat version.txt)") %>%
  run("wget --no-verbose
       https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-$VERSION-amd64.deb
       -O ss-latest.deb") %>%
  run("gdebi -n ss-latest.deb") %>%
  run("rm -f version.txt ss-latest.deb") %>%
  run(". /etc/environment") %>%
  install_r_lib("shiny","rmarkdown") %>%
  run("cp -R /usr/local/lib/R/site-library/shiny/examples/* /srv/shiny-server/") %>%
  expose(3838) %>%
  copy_from_url("https://raw.githubusercontent.com/rocker-org/shiny/master/shiny-server.sh",
                "/usr/bin/shiny-server.sh")

# Start a dockerfile based off of the rocker/shiny image to generate a
# shiny server using R version 3.6.1, update all existing software
# and install git and curl. Then initialize Rstudio server, and copy in a config file

dockerfile() %>%
 from("rocker/r-ver:devel") %>%
 update() %>%
 install("sudo","gdebi","pandoc","pandoc-citeproc",
         "libcurl4-gnutls-dev","libcairo2-dev",
         "libxtdev","wget","curl") %>%
  run("wget --no-verbose
       https://download3.rstudio.org/ubuntu-14.04/x86_64/VERSION
       -O version.txt") %>%
  run("VERSION=$(cat version.txt)") %>%
  run("wget --no-verbose
       https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-$VERSION-amd64.deb
       -O ss-latest.deb") %>%
  run("gdebi -n ss-latest.deb") %>%
  run("rm -f version.txt ss-latest.deb") %>%
  run(". /etc/environment") %>%
  install_r_lib("shiny","rmarkdown") %>%
  run("cp -R /usr/local/lib/R/site-library/shiny/examples/* /srv/shiny-server/") %>%
  expose(3838) %>%
  copy_from_url("https://raw.githubusercontent.com/rocker-org/shiny/master/shiny-server.sh",
                "/usr/bin/shiny-server.sh") %>%
  add("/my/local/shiny/folder/","/srv/shiny-server/")

thebioengineer/dockyard documentation built on Dec. 4, 2019, 1:44 a.m.