simu_cluster: SCRIP simulation for clustering analysis with multiple cell...

In thecailab/SCRIP: An Accurate Simulator for Single-Cell RNA Sequencing Data

SCRIP simulation for clustering analysis with multiple cell types

Description

Simulate count data for clustering analysis by preserving variably expressed genes with multiple cell types

Usage

simu_cluster(expre_data, pheno_data, CTlist, mode, nfeatures, seed = 2021)

Arguments

expre_data	data matrix required for simulation
pheno_data	phenotype data information
CTlist	cell types used for simulation
mode	"GP-commonBCV", "BP-commonBCV", "BP", "BGP-commonBCV" and "BGP-trendedBCV"
nfeatures	parameter required for FinalVariable function in Seurat package
seed	seed used for simulation

Value

simulated read counts data with cell type information

thecailab/SCRIP documentation built on March 1, 2023, 7:56 p.m.