Files in thednainus/HIVepisim

Network-modeling for MSM population in San Diego.

Analyses/ECDC_Incidence/Get_incidence_rates_v2.R Analyses/ECDC_Incidence/incidence_plot_ecdc.pdf Analyses/ECDC_Incidence/plot_ECDC_Incidence.R Analyses/Examples/example.pdf Analyses/Imperial_College_Cluster/Simulate_16Feb2022_OSG_checkpoint.R Analyses/OSG_cluster/Simulate_25Feb2022_OSG_checkpoint.R Analyses/OSG_cluster/generate_dag_file.R Analyses/OSG_cluster/generate_dag_file_2.R Analyses/OSG_cluster/generate_dag_file_3.R Analyses/Testing_data/testing.R Analyses/Testing_data/testing_all.R Analyses/XSEDE_cluster/Simulate_21Feb2022_XSEDE.R Analyses/copy_files.R Analyses/plot_simulation_results.R Analyses/post_diagnosis/checking_best_runs.R Analyses/sample_parameters_6dim_31Jan2022.R R/module.aging.R R/module.arrival.R R/module.departure.R R/module.hivprogress.R R/module.hivtest.R R/module.hivtrans.R R/module.hivtx.R R/module.initialize.R R/module.migration.R R/module.nwupdate.R R/module.prevalence.R R/network_utils.R R/param_SDiego.R R/sampling_utils.R R/simulateMSM_population.R README.md man/aging_msm.Rd man/append_core_attr_mig.Rd man/arrivals_mig.Rd man/arrivals_mig2.Rd man/delete_edges.Rd man/departure_mig.Rd man/departure_mig2.Rd man/departure_mig3.Rd man/get_rate.Rd man/hivprogress_msm.Rd man/hivtest_msm.Rd man/hivtrans_mig.Rd man/hivtx_msm.Rd man/init_status_mig.Rd man/initialize_mig.Rd man/migration.Rd man/migration2.Rd man/nwupdate_mig.Rd man/param_msm_sdiego.Rd man/prevalence_mig.Rd man/sampler.Rd man/sampler2.Rd man/save_art.Rd man/save_art_halt.Rd man/save_art_reinit.Rd man/save_departures.Rd man/save_diagnosis_time.Rd man/save_nodes.Rd man/save_r0.Rd man/save_stage.Rd man/save_track_origin.Rd man/save_track_stages.Rd man/set_art_halt.Rd man/set_art_init.Rd man/set_art_reinit.Rd man/set_departures.Rd man/set_diagnosis_time.Rd man/set_stage.Rd man/simulate_msm_pop.Rd man/simulate_population.Rd man/track_nodes.Rd man/track_origin.Rd man/track_stages.Rd man/update_unique_ids.Rd