hivtrans_mig: Transmission Module
In thednainus/HIVepisim: Network-modeling for MSM population in San Diego.
View source: R/module.hivtrans.R
hivtrans_mig R Documentation
Transmission Module
Description
Stochastically simulates disease transmission given the current
state of the discordand edgelist. This function should be used
when there is migration.
Usage
hivtrans_mig(dat, at)
Arguments
dat
Master list object containing a networkDynamic object and
other initialization information passed from netsim.
at
Current time step.
Details
This is the final substantive function that occurs within the time loop at
each time step. This function takes the discordant edgelist and calculates a
transmission probability for each row between dyads on the
network. After transmission events, individual-level attributes for the infected
persons are updated and summary statistics for incidence calculated.
Value
For each new infection, the disease status, infection time, and related
HIV attributes are updated for the infected node. Summary statistics for
disease incidence overall are calculated and stored on dat$epi.
thednainus/HIVepisim documentation built on Nov. 23, 2023, 12:26 a.m.
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View source: R/module.hivtrans.R
| hivtrans_mig | R Documentation |
Transmission Module
Description
Stochastically simulates disease transmission given the current state of the discordand edgelist. This function should be used when there is migration.
Usage
hivtrans_mig(dat, at)
Arguments
dat |
Master list object containing a |
at |
Current time step. |
Details
This is the final substantive function that occurs within the time loop at each time step. This function takes the discordant edgelist and calculates a transmission probability for each row between dyads on the network. After transmission events, individual-level attributes for the infected persons are updated and summary statistics for incidence calculated.
Value
For each new infection, the disease status, infection time, and related
HIV attributes are updated for the infected node. Summary statistics for
disease incidence overall are calculated and stored on dat$epi.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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