Man pages for thednainus/HIVepisim
Network-modeling for MSM population in San Diego.
| aging_msm | Aging Module |
| append_core_attr_mig | Function to append core attributes |
| arrivals_mig | Arrivals Module |
| arrivals_mig2 | Arrivals Module |
| delete_edges | Fast Version of network::delete.vertices for... |
| departure_mig | Depature Module |
| departure_mig2 | Depature Module |
| departure_mig3 | Depature Module |
| get_rate | Get rate based on linear interpolation |
| hivprogress_msm | Disease Progression Module |
| hivtest_msm | HIV Testing Module |
| hivtrans_mig | Transmission Module |
| hivtx_msm | Treatment Module |
| initialize_mig | Initialization: netsim Module |
| init_status_mig | Disease Status Initialization Module for netsim |
| migration | Migration Module |
| migration2 | Migration Module |
| nwupdate_mig | Dynamic Network Updates |
| param_msm_sdiego | Epidemic Model Parameters |
| prevalence_mig | Prevalence Calculations within Time Steps for 2 populations |
| sampler | Sampler to sample parameters from a uniform distribution |
| sampler2 | Sampler to sample parameters from a uniform distribution |
| save_art | Save time in which antiretroviral treatment (ART) started |
| save_art_halt | Save time in which antiretroviral treatment (ART) was hlated |
| save_art_reinit | Save time in which antiretroviral treatment (ART) was... |
| save_departures | Save id and time of individuals that departure the network |
| save_diagnosis_time | Save time in which an individual has been diagnosed as HIV... |
| save_nodes | Save total number of nodes at each time step by attribute... |
| save_r0 | Save time and values for basic reproduction number |
| save_stage | Save stage of HIV infection of nodes in the network at final... |
| save_track_origin | Save time and IDs of nodes and their location. |
| save_track_stages | Save time and IDs of nodes and their stages of HIV infection. |
| set_art_halt | Set time in which antiretroviral treatment (ART) was halted |
| set_art_init | Set time in which antiretroviral treatment (ART) started |
| set_art_reinit | Set time in which antiretroviral treatment (ART) was... |
| set_departures | Save id and time of individuals that departure the network |
| set_diagnosis_time | Set time in which an individual has been diagnosed as HIV... |
| set_stage | Set stage of HIV infection of nodes in the network at final... |
| simulate_msm_pop | Simulate population of MSM in San Diego |
| simulate_population | Simulate population of MSM in San Diego |
| track_nodes | Track total number of nodes by atrribute origin |
| track_origin | Track origin of node in network |
| track_stages | Track HIV stage of infection |
| update_unique_ids | Create the uids for the new nodes |
