Files in thej022214/OUwie
Analysis of Evolutionary Rates in an OU Framework
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/OUwie.R
R/OUwie.anc.R
R/OUwie.boot.R
R/OUwie.contour.r
R/OUwie.dredge.R
R/OUwie.fixed.R
R/OUwie.format.R
R/OUwie.sim.R
R/adjust_bounds.R
R/check.identify.R
R/dentist.R
R/expect.trendy.R
R/fix.kappa.R
R/hOUwie.R
R/hOUwie.internal.R
R/varcov.ou.R
R/vcvbypass.functions.R
R/weight.mat.R
README.md
data/sim.ex.rda
data/tworegime.rda
docs/404.html
docs/articles/OUwie_2.1_adds.html
docs/articles/OUwie_2.1_adds_files/figure-html/unnamed-chunk-10-1.png
docs/articles/OUwie_2.1_adds_files/figure-html/unnamed-chunk-14-1.png
docs/articles/OUwie_2.1_adds_files/figure-html/unnamed-chunk-4-1.png
docs/articles/OUwie_2.1_adds_files/figure-html/unnamed-chunk-9-1.png
docs/articles/OUwie_2.1_adds_files/header-attrs-2.11.3/header-attrs.js
docs/articles/OUwie_2.1_adds_files/header-attrs-2.9/header-attrs.js
docs/articles/hOUwieStarterGuide.html
docs/articles/hOUwieStarterGuide_files/figure-html/unnamed-chunk-10-1.png
docs/articles/hOUwieStarterGuide_files/figure-html/unnamed-chunk-13-1.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Example.html
docs/reference/OUwie-1.png
docs/reference/OUwie.anc.html
docs/reference/OUwie.boot.html
docs/reference/OUwie.contour.html
docs/reference/OUwie.dredge.html
docs/reference/OUwie.fixed.html
docs/reference/OUwie.format.html
docs/reference/OUwie.html
docs/reference/OUwie.sim.html
docs/reference/Rplot001.png
docs/reference/check.identify.html
docs/reference/dent_propose.html
docs/reference/dent_walk.html
docs/reference/fix.kappa.html
docs/reference/getModelAvgParams.html
docs/reference/getModelTable.html
docs/reference/getOUParamStructure.html
docs/reference/hOUwie.fixed.html
docs/reference/hOUwie.html
docs/reference/hOUwie.recon.html
docs/reference/hOUwie.sim.html
docs/reference/hOUwie.thorough.html
docs/reference/hOUwie.walk.html
docs/reference/index.html
docs/reference/plot.OUwie.contour.html
docs/reference/plot.dentist.html
docs/reference/print.dentist.html
docs/reference/summary.dentist.html
docs/sitemap.xml
man/Example.Rd
man/OUwie.Rd
man/OUwie.anc.Rd
man/OUwie.boot.Rd
man/OUwie.contour.Rd
man/OUwie.dredge.Rd
man/OUwie.fixed.Rd
man/OUwie.format.Rd
man/OUwie.sim.Rd
man/check.identify.Rd
man/dent_propose.Rd
man/dent_walk.Rd
man/fix.kappa.Rd
man/getModelAvgParams.Rd
man/getModelTable.Rd
man/getOUParamStructure.Rd
man/hOUwie.Rd
man/hOUwie.fixed.Rd
man/hOUwie.recon.Rd
man/hOUwie.sim.Rd
man/hOUwie.thorough.Rd
man/hOUwie.walk.Rd
man/plot.OUwie.contour.Rd
man/plot.dentist.Rd
man/print.dentist.Rd
man/summary.dentist.Rd
tests/testthat.R
tests/testthat/test-anc-state.R
tests/testthat/test-likelihood.R
tests/testthat/test-restart.R
vignettes/OUwie_2.1_adds.Rmd
vignettes/OUwie_2.1_adds.pdf
vignettes/hOUwieStarterGuide.Rmd
vignettes/hOUwieStarterGuide.html
vignettes/hOUwieStarterGuide.pdf
vignettes/ou.sim500.tre
vignettes/simIdentifiable.Rsave
vignettes/simUnidentifiable.Rsave
vignettes/surfaceDatNRIndent1_2.Rsave
vignettes/surfaceDatNRIndent1_3.Rsave
vignettes/surfaceDatRIndent1_2.Rsave
vignettes/surfaceDatRIndentR_2.Rsave
