tests/testthat/test-restart.R

In thej022214/OUwie: Analysis of Evolutionary Rates in an OU Framework

context("test-restart.R")

test_that("restarting works", {
    skip_on_cran()
  data("tworegime")
  fitted1 <- OUwie(tree,trait,model=c("OUMV"),root.station=FALSE, opts = list("algorithm"="NLOPT_LN_SBPLX", "maxeval"="5", "ftol_abs"=.1), check.identify=FALSE, algorithm="three.point")
  fitted2 <- OUwie(tree,trait,model=c("OUMV"),root.station=FALSE, check.identify=FALSE,  algorithm="three.point", starting.vals=fitted1$new.start)
  testthat::expect_lt(fitted2$AIC, fitted1$AIC)
})