makePWM: Constructing a pwm object
In thephilross/seqLogo: Sequence logos for DNA sequence alignments
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function constructs an object of class pwm from a matrix. It
checks that the matrix has correct dimensions and that columns add up
to 1.0.
Usage
1
makePWM(pwm, alphabet="DNA")
Arguments
pwm
matrix representing the positon weight matrix
alphabet
character the alphabet making up the
sequence. Currently, only "DNA" is supported.
Value
An object of class pwm.
Author(s)
Oliver Bembom, bembom@berkeley.edu
Examples
1
2
3
mFile <- system.file("Exfiles/pwm1", package="seqLogo")
m <- read.table(mFile)
pwm <- makePWM(m)
thephilross/seqLogo documentation built on May 31, 2019, 9:50 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function constructs an object of class pwm from a matrix. It checks that the matrix has correct dimensions and that columns add up to 1.0.
Usage
1 | makePWM(pwm, alphabet="DNA")
|
Arguments
pwm |
|
alphabet |
|
Value
An object of class pwm.
Author(s)
Oliver Bembom, bembom@berkeley.edu
Examples
1 2 3 | mFile <- system.file("Exfiles/pwm1", package="seqLogo")
m <- read.table(mFile)
pwm <- makePWM(m)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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