minorAllele: Compute minor allele frequency

In thibautjombart/adegenet: Exploratory Analysis of Genetic and Genomic Data

Compute minor allele frequency

Description

This function computes the minor allele frequency for each locus in a genind object. To test if loci are polymorphic, see the function isPoly.

Usage

minorAllele(x)

Arguments

x	a genind object

Author(s)

Thibaut Jombart [e-mail]

See Also

isPoly

Examples

## Not run: 

## LOAD DATA
data(nancycats)

## COMPUTE ALLELE FREQUENCIES
x <- nancycats
apply(tab(x, freq=TRUE),2,mean, na.rm=TRUE)

## GET MINOR ALLELE FREQUENCY
m.freq <- minorAllele(x)
m.freq

## End(Not run)

thibautjombart/adegenet documentation built on Feb. 9, 2023, 5:50 p.m.