Man pages for thibautjombart/outbreaker
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
| get.mu | Derive mutation rate estimation from outbreak's outputs |
| outbreaker | Outbreaker: disease outbreak reconstruction using genetic... |
| outbreaker.package | outbreaker: disease outbreak reconstruction using... |
| plot | Plot outbreaker's results |
| repro | Derive reproduction numbers from outbreak's outputs |
| selectChains | Select 'good' runs from independent MCMC chains |
| simOutbreak | Simulation of pathogen genotypes during disease outbreaks |
| simulated-outbreak-dataset | Toy outbreak dataset used to illustrate outbreaker |
| tTree | Simple transmission tree from outreaber's output |
