|get.mu||Derive mutation rate estimation from outbreak's outputs|
|outbreaker||Outbreaker: disease outbreak reconstruction using genetic...|
|outbreaker.package||outbreaker: disease outbreak reconstruction using...|
|plot||Plot outbreaker's results|
|repro||Derive reproduction numbers from outbreak's outputs|
|selectChains||Select 'good' runs from independent MCMC chains|
|simOutbreak||Simulation of pathogen genotypes during disease outbreaks|
|simulated-outbreak-dataset||Toy outbreak dataset used to illustrate outbreaker|
|tTree||Simple transmission tree from outreaber's output|
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