Man pages for thibautjombart/outbreaker
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

get.muDerive mutation rate estimation from outbreak's outputs
outbreakerOutbreaker: disease outbreak reconstruction using genetic...
outbreaker.packageoutbreaker: disease outbreak reconstruction using...
plotPlot outbreaker's results
reproDerive reproduction numbers from outbreak's outputs
selectChainsSelect 'good' runs from independent MCMC chains
simOutbreakSimulation of pathogen genotypes during disease outbreaks
simulated-outbreak-datasetToy outbreak dataset used to illustrate outbreaker
tTreeSimple transmission tree from outreaber's output
thibautjombart/outbreaker documentation built on Aug. 19, 2017, 10:55 a.m.