DengueBEASTMCC | Dengue fever BEAST MCC tree |
DengueSeqs | Dengue fever sequences |
DengueTrees | BEAST analysis of Dengue fever |
findGroves | Identify clusters of similar trees |
findMRCIs | Find MRCIs |
fluTrees | BEAST analysis of seasonal influenza (A/H3N2) |
linearMrca | Linear MRCA function |
medTree | Geometric median tree function |
multiDist | Metric function for 'multiPhylo' input |
plotGroves | Scatterplot of groups of trees |
plotGrovesD3 | Scatterplot of groups of trees using 'scatterD3' |
plotTreeDiff | Plot tree differences |
refTreeDist | Metric function for comparing a reference 'phylo' to... |
tipDiff | Find tip position differences |
treeDist | Metric function |
treescape | Phylogenetic tree exploration |
treescapeServer | Web-based tree explorer |
treeVec | Tree vector function |
wiwMedTree | Median transmission tree |
wiwTreeDist | Transmission tree distance |
woodmiceTrees | Bootstrap trees from woodmouse dataset |
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