sim_rabies: A simulated dataset of rabies transmission among dogs
In thibautjombart/vimes: VIsualisation and Monitoring of EpidemicS
Description
Usage
Format
Source
Description
The dataset was obtained using the quicksim package as described in XXXXXXXXX [CITE PAPER].
Usage
1
Format
A list containing the following elements:
- n
the number of observed cases of dog rabies
- id
a vector containing the ids of cases
- ances
a vector containing the ids of the infector of each case.
If the case was imported, this is NA.
Note the case can be infected by an infividual not observed (because of underreporting),
in which case ances will not be in the list of ids.
- cases
a list containing details on eqch observed case, namely:
- date: the date (in number of days from start of the outbreak) of symptoms onset for this case,
- location: the x and y spatial coordinates for this case,
- dna: a vector of point mutations (compared to a reference) for the pathogen in this case.
Source
LINK TO PAPER
thibautjombart/vimes documentation built on May 31, 2019, 10:38 a.m.
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Description Usage Format Source
Description
The dataset was obtained using the quicksim package as described in XXXXXXXXX [CITE PAPER].
Usage
1 |
Format
A list containing the following elements:
- n
the number of observed cases of dog rabies
- id
a vector containing the ids of cases
- ances
a vector containing the ids of the infector of each case. If the case was imported, this is NA. Note the case can be infected by an infividual not observed (because of underreporting), in which case ances will not be in the list of ids.
- cases
a list containing details on eqch observed case, namely: - date: the date (in number of days from start of the outbreak) of symptoms onset for this case, - location: the x and y spatial coordinates for this case, - dna: a vector of point mutations (compared to a reference) for the pathogen in this case.
Source
LINK TO PAPER
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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