plotSTEPCAM: Plot the output generated by the STEPCAM_ABC function

In thijsjanzen/STEPCAM: ABC-SMC Inference of STEPCAM

Description

This function plots the posterior distribution inferred by the STEPCAM_ABC function for the three community assembly parameters dispersal assembly, habitat filtering and limiting similarity.

Usage

plotSTEPCAM(output)

Arguments

output

The list generated by the function STEPCAM_ABC as output, this list contains the following elements: - DA a vector containing the posterior distribution for the parameter dispersal assembly - HF a vector containing the posterior distribution for the parameter habitat filtering - LS a vector containing the posterior distribution for the parameter limiting similarity

Author(s)

Thijs Janzen

Examples

## Not run: 
Artificial.Data <- generate.Artificial.Data(n_species = 40, n_traits = 3,
                        n_communities = 5, occurence_distribution = 0.2,
                        average_richness = 0.5, sd_richness = 0.2,
                        mechanism_random=FALSE)
O <- STEPCAM_ABC(Artificial.Data$abundances,Artificial.Data$traits,
                 numParticles=10,n_traits=3,plot_number=1,stopRate=0.8);
plotSTEPCAM(O);

## End(Not run)

thijsjanzen/STEPCAM documentation built on Dec. 19, 2020, 11:56 p.m.