NEWS.md

In thomasgredig/nanoscopeAFM: Load and Analyze Atomic Force Microscopy Data Files

nanoscopeAFM 2.0.14

• add AFM.history() to recreate AFM data object (reproducibility)
• bug fixes for AFM.crop()

nanoscopeAFM 2.0.13

• extract force-distance spectroscopy curves with AFM.specData()
• add sample spectroscopy image
• allow GUI to select AFM.crop() origin

nanoscopeAFM 2.0.12

• read images that are not square
• fix units for Phase image in Park AFM images
• update NanoScope image reader for V8
• AFM.dataType() has new type of "spectroscopy"
• Use raster::click() function to select two points in AFM.lineProfile() if coordinates are not provided
• Support pixels for profile scans in AFM.lineProfile()

nanoscopeAFM 2.0.11

• Load Spectroscopy Data from TIFF (Park AFM files), stored into data$specHead and data$specData

nanoscopeAFM 2.0.10

• Update the Vignettes and Documentation
• Height-Height Correlation Function Documentation
• Adding AFM image range adjustment
• GraphType=4 and add size to vary the bar description size
• support NID file size for non-square files in get.NID_imageInfo (useful for resonance curves)
• load all channels for NID file
• support NID frequency scan
• add sample NID frequency scan file
• fix unassigned variables

nanoscopeAFM 2.0.9

• Allow to extract different channels using AFM.getLine
• Update descriptions and examples

nanoscopeAFM 2.0.8

• to save space, AFMdata object can drop certain images using AFM.selectChannel

nanoscopeAFM 2.0.7

• update documentation
• functionality to crop images

nanoscopeAFM 2.0.6

• add function AFM.getLine() to pick one particular image line
• make trimPeak=0.01 the default for displaying images
• add cantilever and resonance frequency to AFMinfo

nanoscopeAFM 2.0.5

• add artificial image generator
• fix profile for images that are not square
• Height-height correlation function integration
• add vignette for Line Profile
• fix x-y line profile directions
• fix bin number in histogram
• add viridis color palette by default, revert back with redBlue=TRUE
• create sticker with hexSticker package
• run devtools::test_coverage()
• run rhub::check_for_cran()
• fix several variables to eliminate rchk warnings
• allow trimPeaks, which removes extreme points for better contrast
• fix graphing of channels > 1
• add line profiles

nanoscopeAFM 2.0.4

• update Park image reader
• integrate Igor dependence

nanoscopeAFM 2.0.3

• allow AFMinfo.item() to return all names
• update vignette with information:
• rcmdcheck() package and add libraries
• update changelog

nanoscopeAFM 2.0.2

• Park images and force curves are supported

nanoscopeAFM 2.0.0

• remove old dependencies
• add new types for AFM plotting, adding graphType = c(1,2)

nanoscopeAFM 1.1.0

• first release, use to have backwards-compatibility
• change data format of @data in AFMdata structure from data.frame to list to accommodate multiple images
• new reader for AR images
• eliminate z-conversion, since we are saving the units for the z values, just store the converted values
• complete AFMinfo documentation for all 4 instruments

nanoscopeAFM 1.0.5

• replace x.max.nm with x.conv, and y.conv similar to z.conv; scaling parameters to change units to nm
• add sample description possibility

nanoscopeAFM 1.0.4

• correct height computation for NanoScope images

nanoscopeAFM 1.0.3

• some minor fixes to make AFM.raster() work
• add AFM.lineProfile() function (not rendering though yet)
• Github IO Help Page

nanoscopeAFM 1.0.1

• fix channels for AFM import
• include only data$z, generate the others using AFM.raster()

nanoscopeAFM 1.0

• create S4 class AFMdata
• create print method to display image
• create AFM.import function to generate class AFMdata

nanoscopeAFM 0.6.6

• update test files:
• system.file("extdata","Park_20210916_034.tiff",package="nanoscopeAFM")
• system.file("extdata","AR_20211011.ibw",package="nanoscopeAFM")
• system.file("extdata","Veeco_20160622.003",package="nanoscopeAFM")
• system.file("extdata","NanoSurf_20160301.nid",package="nanoscopeAFM")

nanoscopeAFM 0.6.3

• add notes/comments to INFO
• open MFM images from Igor with Nap files
• using field descriptions: https://github.com/wking/igor/blob/master/igor/binarywave.py

nanoscopeAFM 0.6.2

• add AFM.info with common information about AFM image

nanoscopeAFM 0.6.1

• Major update, rename most functions (see README for deprecated functions)
• Add support for Park AFM images in TIFF format
• add images for Veeco, Nanosurf, Park, and Asylum Research
• expand testing (testthat)

nanoscopeAFM 0.6.0

• support pgkdown, use

  pkgdown::build_site() to build the site and export to thomasgredig.github.io

nanoscopeAFM 0.5.1

• fixed scales in output

thomasgredig/nanoscopeAFM documentation built on Jan. 4, 2023, 1:33 p.m.