revdep/failures.md
In thomasp85/patchwork: The Composer of Plots
bbknnR
- Version: 1.1.1
- GitHub: https://github.com/ycli1995/bbknnR
- Source code: https://github.com/cran/bbknnR
- Date/Publication: 2024-02-13 10:20:03 UTC
- Number of recursive dependencies: 163
Run revdepcheck::cloud_details(, "bbknnR") for more info
In both
- checking whether package ‘bbknnR’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘bbknnR’ ...
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o
g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR
installing to /tmp/workdir/bbknnR/new/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
** R
...
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘panc8_small’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘bbknnR’
* removing ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/bbknnR’
CRAN
* installing *source* package ‘bbknnR’ ...
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o
g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR
installing to /tmp/workdir/bbknnR/old/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
** R
...
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘panc8_small’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘bbknnR’
* removing ‘/tmp/workdir/bbknnR/old/bbknnR.Rcheck/bbknnR’
iNZightRegression
- Version: 1.3.4
- GitHub: https://github.com/iNZightVIT/iNZightRegression
- Source code: https://github.com/cran/iNZightRegression
- Date/Publication: 2024-04-05 02:32:59 UTC
- Number of recursive dependencies: 159
Run revdepcheck::cloud_details(, "iNZightRegression") for more info
In both
- checking whether package ‘iNZightRegression’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘iNZightRegression’ ...
** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘iNZightRegression’
* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’
CRAN
* installing *source* package ‘iNZightRegression’ ...
** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘iNZightRegression’
* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’
pcvr
- Version: 1.0.0
- GitHub: https://github.com/danforthcenter/pcvr
- Source code: https://github.com/cran/pcvr
- Date/Publication: 2024-09-05 17:30:02 UTC
- Number of recursive dependencies: 189
Run revdepcheck::cloud_details(, "pcvr") for more info
In both
- checking whether package ‘pcvr’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘pcvr’ ...
** package ‘pcvr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘pcvr’
* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’
CRAN
* installing *source* package ‘pcvr’ ...
** package ‘pcvr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘pcvr’
* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’
PoweREST
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/PoweREST
- Date/Publication: 2024-09-09 09:30:02 UTC
- Number of recursive dependencies: 171
Run revdepcheck::cloud_details(, "PoweREST") for more info
In both
- checking whether package ‘PoweREST’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘PoweREST’ ...
** package ‘PoweREST’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘PoweREST’
* removing ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/PoweREST’
CRAN
* installing *source* package ‘PoweREST’ ...
** package ‘PoweREST’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘PoweREST’
* removing ‘/tmp/workdir/PoweREST/old/PoweREST.Rcheck/PoweREST’
powerly
- Version: 1.8.6
- GitHub: https://github.com/mihaiconstantin/powerly
- Source code: https://github.com/cran/powerly
- Date/Publication: 2022-09-09 14:10:01 UTC
- Number of recursive dependencies: 181
Run revdepcheck::cloud_details(, "powerly") for more info
In both
- checking whether package ‘powerly’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘powerly’ ...
** package ‘powerly’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘powerly’
* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’
CRAN
* installing *source* package ‘powerly’ ...
** package ‘powerly’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘powerly’
* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’
RNAseqQC
- Version: 0.2.1
- GitHub: https://github.com/frederikziebell/RNAseqQC
- Source code: https://github.com/cran/RNAseqQC
- Date/Publication: 2024-07-15 14:40:02 UTC
- Number of recursive dependencies: 162
Run revdepcheck::cloud_details(, "RNAseqQC") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/RNAseqQC/new/RNAseqQC.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'ensembldb', 'ComplexHeatmap'
Package suggested but not available for checking: ‘recount3’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
CRAN
* using log directory ‘/tmp/workdir/RNAseqQC/old/RNAseqQC.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'ensembldb', 'ComplexHeatmap'
Package suggested but not available for checking: ‘recount3’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
scCustomize
- Version: 2.1.2
- GitHub: https://github.com/samuel-marsh/scCustomize
- Source code: https://github.com/cran/scCustomize
- Date/Publication: 2024-02-28 19:40:02 UTC
- Number of recursive dependencies: 267
Run revdepcheck::cloud_details(, "scCustomize") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘scCustomize/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scCustomize’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
CRAN
* using log directory ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘scCustomize/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scCustomize’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
scGate
- Version: 1.6.2
- GitHub: https://github.com/carmonalab/scGate
- Source code: https://github.com/cran/scGate
- Date/Publication: 2024-04-23 08:50:02 UTC
- Number of recursive dependencies: 179
Run revdepcheck::cloud_details(, "scGate") for more info
In both
- checking whether package ‘scGate’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘scGate’ ...
** package ‘scGate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scGate’
* removing ‘/tmp/workdir/scGate/new/scGate.Rcheck/scGate’
CRAN
* installing *source* package ‘scGate’ ...
** package ‘scGate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scGate’
* removing ‘/tmp/workdir/scGate/old/scGate.Rcheck/scGate’
scRNAstat
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/scRNAstat
- Date/Publication: 2021-09-22 08:10:02 UTC
- Number of recursive dependencies: 156
Run revdepcheck::cloud_details(, "scRNAstat") for more info
In both
- checking whether package ‘scRNAstat’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘scRNAstat’ ...
** package ‘scRNAstat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘SeuratObject’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
...
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘DBI’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scRNAstat’
* removing ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/scRNAstat’
CRAN
* installing *source* package ‘scRNAstat’ ...
** package ‘scRNAstat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘SeuratObject’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
...
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘DBI’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scRNAstat’
* removing ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck/scRNAstat’
Seurat
- Version: 5.1.0
- GitHub: https://github.com/satijalab/seurat
- Source code: https://github.com/cran/Seurat
- Date/Publication: 2024-05-10 17:23:17 UTC
- Number of recursive dependencies: 267
Run revdepcheck::cloud_details(, "Seurat") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/Seurat/new/Seurat.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Seurat/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Seurat’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
CRAN
* using log directory ‘/tmp/workdir/Seurat/old/Seurat.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Seurat/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Seurat’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
sigminer
- Version: 2.3.1
- GitHub: https://github.com/ShixiangWang/sigminer
- Source code: https://github.com/cran/sigminer
- Date/Publication: 2024-05-11 08:50:02 UTC
- Number of recursive dependencies: 209
Run revdepcheck::cloud_details(, "sigminer") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/sigminer/new/sigminer.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘sigminer/DESCRIPTION’ ... OK
...
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... OK
‘cnsignature.Rmd’ using ‘UTF-8’... OK
‘sigminer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
CRAN
* using log directory ‘/tmp/workdir/sigminer/old/sigminer.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘sigminer/DESCRIPTION’ ... OK
...
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... OK
‘cnsignature.Rmd’ using ‘UTF-8’... OK
‘sigminer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
Signac
- Version: 1.14.0
- GitHub: https://github.com/stuart-lab/signac
- Source code: https://github.com/cran/Signac
- Date/Publication: 2024-08-21 07:40:02 UTC
- Number of recursive dependencies: 247
Run revdepcheck::cloud_details(, "Signac") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/Signac/new/Signac.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Signac/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Signac’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
CRAN
* using log directory ‘/tmp/workdir/Signac/old/Signac.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Signac/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Signac’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Signac/old/Signac.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
SimplyAgree
- Version: 0.2.0
- GitHub: https://github.com/arcaldwell49/SimplyAgree
- Source code: https://github.com/cran/SimplyAgree
- Date/Publication: 2024-03-21 14:20:06 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "SimplyAgree") for more info
In both
- checking whether package ‘SimplyAgree’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘SimplyAgree’ ...
** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘SimplyAgree’
* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’
CRAN
* installing *source* package ‘SimplyAgree’ ...
** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘SimplyAgree’
* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’
thomasp85/patchwork documentation built on June 14, 2025, 8:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
bbknnR
- Version: 1.1.1
- GitHub: https://github.com/ycli1995/bbknnR
- Source code: https://github.com/cran/bbknnR
- Date/Publication: 2024-02-13 10:20:03 UTC
- Number of recursive dependencies: 163
Run revdepcheck::cloud_details(, "bbknnR") for more info
In both
- checking whether package ‘bbknnR’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘bbknnR’ ...
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o
g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR
installing to /tmp/workdir/bbknnR/new/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
** R
...
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘panc8_small’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘bbknnR’
* removing ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/bbknnR’
CRAN
* installing *source* package ‘bbknnR’ ...
** package ‘bbknnR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o
g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR
installing to /tmp/workdir/bbknnR/old/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
** R
...
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘panc8_small’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘bbknnR’
* removing ‘/tmp/workdir/bbknnR/old/bbknnR.Rcheck/bbknnR’
iNZightRegression
- Version: 1.3.4
- GitHub: https://github.com/iNZightVIT/iNZightRegression
- Source code: https://github.com/cran/iNZightRegression
- Date/Publication: 2024-04-05 02:32:59 UTC
- Number of recursive dependencies: 159
Run revdepcheck::cloud_details(, "iNZightRegression") for more info
In both
- checking whether package ‘iNZightRegression’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘iNZightRegression’ ...
** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘iNZightRegression’
* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’
CRAN
* installing *source* package ‘iNZightRegression’ ...
** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘iNZightRegression’
* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’
pcvr
- Version: 1.0.0
- GitHub: https://github.com/danforthcenter/pcvr
- Source code: https://github.com/cran/pcvr
- Date/Publication: 2024-09-05 17:30:02 UTC
- Number of recursive dependencies: 189
Run revdepcheck::cloud_details(, "pcvr") for more info
In both
- checking whether package ‘pcvr’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘pcvr’ ...
** package ‘pcvr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘pcvr’
* removing ‘/tmp/workdir/pcvr/new/pcvr.Rcheck/pcvr’
CRAN
* installing *source* package ‘pcvr’ ...
** package ‘pcvr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘pcvr’
* removing ‘/tmp/workdir/pcvr/old/pcvr.Rcheck/pcvr’
PoweREST
- Version: 0.1.0
- GitHub: NA
- Source code: https://github.com/cran/PoweREST
- Date/Publication: 2024-09-09 09:30:02 UTC
- Number of recursive dependencies: 171
Run revdepcheck::cloud_details(, "PoweREST") for more info
In both
- checking whether package ‘PoweREST’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘PoweREST’ ...
** package ‘PoweREST’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘PoweREST’
* removing ‘/tmp/workdir/PoweREST/new/PoweREST.Rcheck/PoweREST’
CRAN
* installing *source* package ‘PoweREST’ ...
** package ‘PoweREST’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘PoweREST’
* removing ‘/tmp/workdir/PoweREST/old/PoweREST.Rcheck/PoweREST’
powerly
- Version: 1.8.6
- GitHub: https://github.com/mihaiconstantin/powerly
- Source code: https://github.com/cran/powerly
- Date/Publication: 2022-09-09 14:10:01 UTC
- Number of recursive dependencies: 181
Run revdepcheck::cloud_details(, "powerly") for more info
In both
- checking whether package ‘powerly’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘powerly’ ...
** package ‘powerly’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘powerly’
* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’
CRAN
* installing *source* package ‘powerly’ ...
** package ‘powerly’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘powerly’
* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’
RNAseqQC
- Version: 0.2.1
- GitHub: https://github.com/frederikziebell/RNAseqQC
- Source code: https://github.com/cran/RNAseqQC
- Date/Publication: 2024-07-15 14:40:02 UTC
- Number of recursive dependencies: 162
Run revdepcheck::cloud_details(, "RNAseqQC") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/RNAseqQC/new/RNAseqQC.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'ensembldb', 'ComplexHeatmap'
Package suggested but not available for checking: ‘recount3’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
CRAN
* using log directory ‘/tmp/workdir/RNAseqQC/old/RNAseqQC.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK
...
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'ensembldb', 'ComplexHeatmap'
Package suggested but not available for checking: ‘recount3’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
scCustomize
- Version: 2.1.2
- GitHub: https://github.com/samuel-marsh/scCustomize
- Source code: https://github.com/cran/scCustomize
- Date/Publication: 2024-02-28 19:40:02 UTC
- Number of recursive dependencies: 267
Run revdepcheck::cloud_details(, "scCustomize") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘scCustomize/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scCustomize’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
CRAN
* using log directory ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘scCustomize/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scCustomize’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
scGate
- Version: 1.6.2
- GitHub: https://github.com/carmonalab/scGate
- Source code: https://github.com/cran/scGate
- Date/Publication: 2024-04-23 08:50:02 UTC
- Number of recursive dependencies: 179
Run revdepcheck::cloud_details(, "scGate") for more info
In both
- checking whether package ‘scGate’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘scGate’ ...
** package ‘scGate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scGate’
* removing ‘/tmp/workdir/scGate/new/scGate.Rcheck/scGate’
CRAN
* installing *source* package ‘scGate’ ...
** package ‘scGate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘query.seurat’
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scGate’
* removing ‘/tmp/workdir/scGate/old/scGate.Rcheck/scGate’
scRNAstat
- Version: 0.1.1
- GitHub: NA
- Source code: https://github.com/cran/scRNAstat
- Date/Publication: 2021-09-22 08:10:02 UTC
- Number of recursive dependencies: 156
Run revdepcheck::cloud_details(, "scRNAstat") for more info
In both
- checking whether package ‘scRNAstat’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘scRNAstat’ ...
** package ‘scRNAstat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘SeuratObject’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
...
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘DBI’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scRNAstat’
* removing ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck/scRNAstat’
CRAN
* installing *source* package ‘scRNAstat’ ...
** package ‘scRNAstat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Warning: namespace ‘Seurat’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘SeuratObject’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
...
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
Warning: namespace ‘DBI’ is not available and has been replaced
by .GlobalEnv when processing object ‘AJ064_small_last_sce’
** byte-compile and prepare package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘scRNAstat’
* removing ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck/scRNAstat’
Seurat
- Version: 5.1.0
- GitHub: https://github.com/satijalab/seurat
- Source code: https://github.com/cran/Seurat
- Date/Publication: 2024-05-10 17:23:17 UTC
- Number of recursive dependencies: 267
Run revdepcheck::cloud_details(, "Seurat") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/Seurat/new/Seurat.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Seurat/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Seurat’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Seurat/new/Seurat.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
CRAN
* using log directory ‘/tmp/workdir/Seurat/old/Seurat.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Seurat/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Seurat’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Seurat/old/Seurat.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
sigminer
- Version: 2.3.1
- GitHub: https://github.com/ShixiangWang/sigminer
- Source code: https://github.com/cran/sigminer
- Date/Publication: 2024-05-11 08:50:02 UTC
- Number of recursive dependencies: 209
Run revdepcheck::cloud_details(, "sigminer") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/sigminer/new/sigminer.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘sigminer/DESCRIPTION’ ... OK
...
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... OK
‘cnsignature.Rmd’ using ‘UTF-8’... OK
‘sigminer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
CRAN
* using log directory ‘/tmp/workdir/sigminer/old/sigminer.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘sigminer/DESCRIPTION’ ... OK
...
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... OK
‘cnsignature.Rmd’ using ‘UTF-8’... OK
‘sigminer.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
Signac
- Version: 1.14.0
- GitHub: https://github.com/stuart-lab/signac
- Source code: https://github.com/cran/Signac
- Date/Publication: 2024-08-21 07:40:02 UTC
- Number of recursive dependencies: 247
Run revdepcheck::cloud_details(, "Signac") for more info
Error before installation
Devel
* using log directory ‘/tmp/workdir/Signac/new/Signac.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Signac/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Signac’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Signac/new/Signac.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
CRAN
* using log directory ‘/tmp/workdir/Signac/old/Signac.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Signac/DESCRIPTION’ ... OK
...
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Signac’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/Signac/old/Signac.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR, 1 NOTE
SimplyAgree
- Version: 0.2.0
- GitHub: https://github.com/arcaldwell49/SimplyAgree
- Source code: https://github.com/cran/SimplyAgree
- Date/Publication: 2024-03-21 14:20:06 UTC
- Number of recursive dependencies: 115
Run revdepcheck::cloud_details(, "SimplyAgree") for more info
In both
- checking whether package ‘SimplyAgree’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘SimplyAgree’ ...
** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘SimplyAgree’
* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’
CRAN
* installing *source* package ‘SimplyAgree’ ...
** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in check_dep_version() :
ABI version mismatch:
lme4 was built with Matrix ABI version 1
Current Matrix ABI version is 0
Please re-install lme4 from source or restore original ‘Matrix’ package
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace
Execution halted
ERROR: lazy loading failed for package ‘SimplyAgree’
* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’
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