| adjust_fdr | Adjust p.values for wide format |
| anansi_compute_clr | compute CLR using Aitchison's method |
| clr_imputed | Resample random values, perform CLR over each iteration and... |
| clr_lite | Impute zeroes and perform a centered log-ratio (CLR)... |
| coef_to_wide | Take all coefficients and prepare them for wide format. |
| compare_to_null | Fit a null model for a linear mixed effect model |
| counts | The curated and aggregated genus-level count table from the... |
| diet | A snippet of the dietary intake from the schizophrenia study |
| div_applier | Functional wrapper to get the output of the wonderful iNext... |
| fit_glm | Fit a linear model |
| fit_glmer | Fit a linear mixed effect model |
| fit_null | Fit a null model for a linear mixed effect model |
| fw_fit | run a model on every row of your data. Made with microbiome... |
| fw_glm | lm wrapper around fw_fit. |
| fw_glmer | lmer wrapper around fw_fit. |
| gather_anova | Extract and format anova results |
| gather_coefs | Extract and format coefficients. |
| gather_full | Extract and format full model results |
| gather_tukeys | Extract and format TukeyHSD results |
| GBMs | The curated Gut-Brain modules count table from the... |
| get_aldex_exp | Extract the CLR-transformed values from the ALDEX2 |
| get_asymptotic_alpha | Functional wrapper to get the output of the wonderful iNext... |
| get_model_p | Calculate p-value for entire model fit |
| GMMs | The curated Gut-Metabolic modules count table from the... |
| impute_zeroes | Replace zeroes with non-zero values in order to perform a... |
| interpret_order | Go from vector to individual booleans |
| make_output | Make a container list based on the order |
| metadata | A snippet of the metadata from the schizophrenia study |
| p.adjust.resamp | Adjust p-values using resampling |
| pairwise_aitchison_PERMANOVA | Perform pairwise PERMANOVAs as a post-hoc |
| pairwise_DA_tester | Perform pairwise t-tests |
| p_resamp_q | Compute a single q-value through resampling. |
| un_cpm | Undo CPM transformation |
| unroll_coefs | Take all coefficients and prepare them for wide format.... |
| unroll_names | Take all coefficients and prepare them for wide format.... |
