get_aldex_exp: Extract the CLR-transformed values from the ALDEX2
In thomazbastiaanssen/Tjazi: Microbiome Oriented Compositional Data Toolkit
View source: R/get_aldex_exp.R
get_aldex_exp R Documentation
Extract the CLR-transformed values from the ALDEX2
Description
Microbiome data is compositional. When compositional data is examined using non-compositional methods, many problems arise.
Performing a centered log-ratio transformation is a reasonable way to address these problems reasonably well. This particular method takes advantage of the excellent ALDEX2 package.
Usage
get_aldex_exp(clr, useMC = TRUE, verbose = TRUE)
thomazbastiaanssen/Tjazi documentation built on Aug. 22, 2023, 1:30 a.m.
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View source: R/get_aldex_exp.R
| get_aldex_exp | R Documentation |
Extract the CLR-transformed values from the ALDEX2
Description
Microbiome data is compositional. When compositional data is examined using non-compositional methods, many problems arise. Performing a centered log-ratio transformation is a reasonable way to address these problems reasonably well. This particular method takes advantage of the excellent ALDEX2 package.
Usage
get_aldex_exp(clr, useMC = TRUE, verbose = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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