volatility: Compute volatility between pairs of microbiome count data

In thomazbastiaanssen/Volatility: Microbiome-oriented tool to compute degree of compositional change over time

Compute volatility between pairs of microbiome count data

Description

The main function of the volatility package.

Usage

volatility(counts, metadata, transform = TRUE, verbose = TRUE)

Arguments

counts	a microbiome count table, with rows as features and columns as samples
metadata	a vector in the same order as counts, containing information on which samples are from the same source and should be linked.
transform	a boolean, whether to CLR-transform count data beforehand. Highly recommended.
verbose	A boolean. Toggles whether to print diagnostic information while running. Useful for debugging errors on large datasets.

Value

a data.frame with IDs and volatility estimates per sample pair

thomazbastiaanssen/Volatility documentation built on July 13, 2024, 9:09 a.m.