Files in tianyu-lu/dynUGENE
Dynamical Uncertainty-aware GEne NEtwork inference with random forests
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/data.R
R/estimateDecayRates.R
R/inferNetwork.R
R/inferSSNetwork.R
R/plotTrajectory.R
R/rundynUGENE.R
R/simulateUGENE.R
R/tuneThreshold.R
README.Rmd
README.md
data/HodgkinHuxley.rda
data/Repressilator.rda
data/StochasticHodgkinHuxley.rda
data/StochasticRepressilator.rda
dynUGENE.Rproj
inst/CITATION
inst/extdata/dynUGENE.png
inst/extdata/hh-10.png
inst/extdata/hh-100.png
inst/extdata/hh-50.png
inst/extdata/hhnoise1.png
inst/extdata/hhnoise2.png
inst/extdata/hhnoise3.png
inst/extdata/hhnoise4.png
inst/extdata/hhnoise5.png
inst/extdata/logo.PNG
inst/extdata/rep-allparetos.png
inst/extdata/rep-mtry2.png
inst/extdata/rep-network-from-mask3.png
inst/extdata/rep-network-from-mask7.png
inst/extdata/rep-network.png
inst/extdata/rep-noise.png
inst/extdata/rep-pareto-col.png
inst/extdata/rep-pareto-step.png
inst/extdata/rep-pareto.png
inst/extdata/rep-simulation.png
inst/extdata/rep-sparse.png
inst/extdata/rep-stochastic-trajectory.png
inst/extdata/rep-traj-mask16.png
inst/extdata/rep-traj-mask3.png
inst/extdata/rep.png
inst/extdata/repnoise2.png
inst/extdata/repnoise3.png
inst/extdata/repnoise4.png
inst/extdata/repnoise5.png
inst/extdata/syntren-zoom.png
inst/shiny-scripts/app.R
inst/shiny-scripts/currMask.rds
inst/shiny-scripts/rsconnect/shinyapps.io/tianyulu/dynUGENE.dcf
inst/shiny-scripts/stepMasks.rds
inst/shiny-scripts/ugene.rds
inst/shiny-scripts/weightMatrix.rds
inst/shiny-scripts/www/logo.PNG
man/HodgkinHuxley.Rd
man/Repressilator.Rd
man/StochasticHodgkinHuxley.Rd
man/StochasticRepressilator.Rd
man/estimateDecayRates.Rd
man/figures/README-example-1.png
man/figures/README-example-2.png
man/inferNetwork.Rd
man/inferSSNetwork.Rd
man/plotTrajectory.Rd
man/rundynUGENE.Rd
man/simulateUGENE.Rd
man/tuneThreshold.Rd
tests/testthat.R
tests/testthat/mask3.csv
tests/testthat/test-estimateDecayRates.R
tests/testthat/test-inferNetwork.R
tests/testthat/test-inferSSNetwork.R
tests/testthat/test-plotTrajectory.R
tests/testthat/test-simulateUGENE.R
tests/testthat/test-tuneThreshold.R
vignettes/.gitignore
vignettes/Introduction_dynUGENE.Rmd
vignettes/custom-pareto.png
vignettes/hh-10.png
vignettes/hh-100.png
vignettes/hh-3stochastic.PNG
vignettes/hh-50.png
vignettes/hh-allcurrents.PNG
vignettes/hhnoise1.png
vignettes/hhnoise2.png
vignettes/hhnoise3.png
vignettes/hhnoise4.png
vignettes/hhnoise5.png
vignettes/rep-allparetos.png
vignettes/rep-mtry1.png
vignettes/rep-mtry2.png
vignettes/rep-network-from-mask3.png
vignettes/rep-network-from-mask7.png
vignettes/rep-network.png
vignettes/rep-noise.png
vignettes/rep-simulation.png
vignettes/rep-sparse.png
vignettes/rep-stochastic-trajectory.png
vignettes/rep-traj-mask16.png
vignettes/rep-traj-mask3.png
vignettes/rep-traj-mask7.png
vignettes/rep-traj-stochastic.png
vignettes/rep.png
vignettes/repnoise2.png
vignettes/repnoise3.png
vignettes/repnoise4.png
vignettes/repnoise5.png
vignettes/syntren-300.PNG
vignettes/syntren-zoom.png
