In tidymass/massdatabase: Play with databases about mass spectrometry

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  warning = FALSE,
  message = TRUE,
  out.width = "100%"
)

Request

Get the information of all compounds in KEGG (https://www.genome.jp/kegg/compound/).

library(massdatabase)
compound_info <- 
  request_kegg_compound_info()
head(compound_info)

Get the information of all drugs in KEGG (https://www.genome.jp/kegg/drug/).

drug_info <- 
  request_kegg_drug_info()
head(drug_info)

Get one metabolite information.

x <-
  request_kegg_compound(compound_id = "C02886", return_form = "list")
x

y <-
  request_kegg_compound(compound_id = "C02886", return_form = "data.frame")
y

Get one drug information.

x <-
  request_kegg_drug(drug_id = "D00001", return_form = "list")
x

y <-
  request_kegg_drug(drug_id = "D00001", return_form = "data.frame")
y

Session information

sessionInfo()

tidymass/massdatabase documentation built on Sept. 10, 2023, 10:35 p.m.