search_hmdb_database: Search metabolite in HMDB
In tidymass/massdatabase: Play with databases about mass spectrometry
search_hmdb_database R Documentation
Search metabolite in HMDB
Description
Search metabolite in HMDB
Usage
search_hmdb_database(
name = "5-methoxysalicylic acid",
mz = 168.042625,
data_database,
mz_error_cutoff = 100,
similarity_score_cutoff = 0.5
)
Arguments
name
metabolite name
mz
mz
data_database
data_database, metID format
mz_error_cutoff
mz_error_cutoff
similarity_score_cutoff
similarity_score_cutoff
Value
a data frmae
Author(s)
Xiaotao Shen
shenxt1990@outlook.com
tidymass/massdatabase documentation built on Sept. 10, 2023, 10:35 p.m.
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| search_hmdb_database | R Documentation |
Search metabolite in HMDB
Description
Search metabolite in HMDB
Usage
search_hmdb_database(
name = "5-methoxysalicylic acid",
mz = 168.042625,
data_database,
mz_error_cutoff = 100,
similarity_score_cutoff = 0.5
)
Arguments
name |
metabolite name |
mz |
mz |
data_database |
data_database, metID format |
mz_error_cutoff |
mz_error_cutoff |
similarity_score_cutoff |
similarity_score_cutoff |
Value
a data frmae
Author(s)
Xiaotao Shen shenxt1990@outlook.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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