Files in tidymass/massdataset
massdataset

.Rbuildignore
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DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/1-massdataset_logo.R R/2-all_generics.R R/3-attach.R R/4-conflicts.R R/5-data_in_package.R R/6-utils.R R/7-zzz.R R/8-global_variables.R R/9-activate_mass_dataset.R R/SummarizedExperiment-class.R R/arithmetic-mass_dataset.R R/check_functions.R R/convert_mass_dataset2mztab.R R/convert_mass_dataset2summarizedexperiment.R R/convert_msdial2mass_dataset.R R/convert_mzmine2mass_dataset.R R/convert_mztab2mass_dataset.R R/data_checking.R R/data_extracting.R R/dplyr_arrange.R R/dplyr_count.R R/dplyr_filter.R R/dplyr_glimpse.R R/dplyr_group_by.R R/dplyr_left_join.R R/dplyr_mutate.R R/dplyr_pull.R R/dplyr_relocate.R R/dplyr_rename.R R/dplyr_select.R R/dplyr_slice.R R/dplyr_summarize.R R/export_mass_dataset.R R/filter_samples.R R/filter_variables.R
R/functions_from_other_packages.R
R/ggplot2_ggplot.R R/ggplot_mass_dataset.R R/intensity_plot.R R/mSet-class.R R/mass_dataset-methods.R R/mass_dataset_class.R R/mass_dataset_metdna.R R/masstools_mz_rt_match.R R/merge_mass_dataset.R R/method_adjust_confounder.R R/methods-summarize_samples.R R/missing_value_explore_plot.R R/ms2_data-methods.R R/ms2_data_class.R R/ms2_plot.R R/ms2_plot_old.R R/mutate_annotation_table.R R/mutate_mean_intensity.R R/mutate_median_intensity.R R/mutate_ms2.R R/mutate_rsd.R R/mutate_sample_na.R R/mutate_sample_zero.R R/mutate_variable_na.R R/mutate_variable_zero.R R/processing-mass_dataset.R R/reexports.R R/report_parameters.R R/show_mz_rt_plot.R R/split-mass_dataset.R R/subsetting-mass_dataset.R R/summary-mass_dataset.R R/tibble_add_column.R R/tidymass_parameter-methods.R R/tidymass_parameter_class.R R/tidyr_drop_na.R R/tidyr_fill.R R/tidyr_pivot_longer.R R/update_mass_dataset.R README.md
_pkgdown.yml
data/expression_data.rda
data/msdial_table.rda
data/mzmine_table.rda
data/sample_info.rda
data/sample_info_note.rda
data/variable_info.rda
data/variable_info_note.rda
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man/activate_mass_dataset.Rd man/adjust_confounder.Rd man/apply-mass_dataset-method.Rd man/arithmetic-mass_dataset.Rd man/cash-.mass_dataset.Rd man/cbind.mass_dataset.Rd man/cbind_mass_dataset.Rd man/check_annotation_table.Rd man/check_column_name.Rd man/check_mass_dataset.Rd man/check_mass_dataset_class.Rd man/check_object_class.Rd man/colnames.mass_dataset.Rd man/convert_mass_dataset2mztab.Rd man/convert_mass_dataset2summarizedexperiment.Rd man/convert_msdial2mass_dataset.Rd man/convert_mztab2mass_dataset.Rd man/convet_mzmine2mass_dataset.Rd man/create_mass_dataset.Rd man/dim.mass_dataset.Rd man/dimnames.mass_dataset.Rd man/export_mass_dataset.Rd man/export_mass_dataset4metdna.Rd man/export_ms2_data.Rd man/expression_data.Rd
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man/filter-mass_dataset.Rd man/get_massdataset_version.Rd man/ggplot_mass_dataset.Rd man/head.mass_dataset.Rd man/intensity_plot.Rd man/intersect-mass_dataset-mass_dataset-method.Rd man/is.na.mass_dataset.Rd man/left_join_mass_dataset.Rd man/length.mass_dataset.Rd man/mSet-class.Rd man/mass_dataset-class.Rd man/mass_dataset-extracting.Rd man/mass_dataset-summary.Rd man/massdataset_conflicts.Rd man/massdataset_logo.Rd man/massdataset_packages.Rd man/merge_mass_dataset.Rd man/ms2_data-class.Rd man/msdial_table.Rd man/mutate_annotation_table.Rd man/mutate_mean_intensity.Rd man/mutate_median_intensity.Rd man/mutate_ms2.Rd man/mutate_rsd.Rd man/mutate_sample_na_freq.Rd man/mutate_sample_na_number.Rd man/mutate_sample_zero_freq.Rd man/mutate_sample_zero_number.Rd man/mutate_variable_na_freq.Rd man/mutate_variable_na_number.Rd man/mutate_variable_zero_freq.Rd man/mutate_variable_zero_number.Rd man/mzmine_table.Rd man/names.mass_dataset.Rd man/ncol.mass_dataset.Rd man/nrow.mass_dataset.Rd man/parse_tidymass_parameter.Rd man/rbind.mass_dataset.Rd man/rbind_mass_dataset.Rd man/read_mztab.Rd man/reexports.Rd man/report_parameters.Rd man/rownames.mass_dataset.Rd man/sample_info.Rd man/sample_info_note.Rd man/show_missing_values.Rd man/show_mz_rt_plot.Rd man/show_sample_missing_values.Rd man/show_variable_missing_values.Rd man/split_mass_dataset.Rd man/sub-.mass_dataset.Rd man/summarise_samples.Rd man/summary.mass_dataset.Rd man/tail.mass_dataset.Rd man/tidymass_parameter-class.Rd man/translate_tidymass_parameter.Rd man/update_mass_dataset.Rd man/update_sample_info.Rd man/update_variable_info.Rd man/variable_info.Rd man/variable_info_note.Rd
massdataset.Rproj
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tests/testthat.R tests/testthat/test-arrange.R tests/testthat/test-filter.R tests/testthat/test-left_join.R tests/testthat/test-mutate.R tests/testthat/test-mutate_mean_intensity.R tests/testthat/test-mutate_rsd.R tests/testthat/test-mutate_sample_na_number.R tests/testthat/test-mutate_variable_na_number.R tests/testthat/test-select.R tests/testthat/test-slice.R vignettes/accessor.Rmd vignettes/base_function.Rmd vignettes/contact_us.Rmd vignettes/data_import_and_export.Rmd
vignettes/demo_data_pos/expression_data.xlsx
vignettes/demo_data_pos/sample_info.xlsx
vignettes/demo_data_pos/sample_info_note.xlsx
vignettes/demo_data_pos/variable_info.xlsx
vignettes/demo_data_pos/variable_info_note.xlsx
vignettes/extract_data.Rmd
vignettes/feature_table/Peak_table_neg.csv
vignettes/feature_table/Peak_table_pos.csv
vignettes/feature_table/object_neg
vignettes/feature_table/object_pos
vignettes/feature_table/sample_info_neg.csv
vignettes/feature_table/sample_info_pos.csv
vignettes/filtering.Rmd vignettes/massdataset_install.Rmd vignettes/mutate_ms2.Rmd vignettes/summary_info.Rmd
tidymass/massdataset documentation built on Sept. 14, 2024, 4:41 p.m.