massqc_cumulative_rsd_plot: massqc_cumulative_rsd_plot

In tidymass/massqc: Quality assessment of LC-MS based metabolomics data

massqc_cumulative_rsd_plot

Description

massqc_cumulative_rsd_plot

Usage

massqc_cumulative_rsd_plot(..., title, rsd_cutoff, color)

Arguments

...	one or more mass_dataset object
title	missing or same length (character vector) with ...
rsd_cutoff	numeric
color	when one mass_dataset, the line color

Value

ggplot2 plot.

Author(s)

Xiaotao Shen [e-mail]

Examples

library(massdataset)
library(ggplot2)
data("expression_data")
data("sample_info")
data("variable_info")

object =
  create_mass_dataset(
    expression_data = expression_data,
    sample_info = sample_info,
    variable_info = variable_info
  )

massqc_cumulative_rsd_plot(object, rsd_cutoff = 30, color = "blue")

object1 =
  object %>%
  activate_mass_dataset(what = "sample_info") %>%
  dplyr::filter(class == "QC")

object2 =
  object %>%
  activate_mass_dataset(what = "sample_info") %>%
  dplyr::filter(class == "Subject")

massqc_cumulative_rsd_plot(object1, object2,
                           title = c("QC", "Subject")) +
  ggsci::scale_color_lancet()

massqc_cumulative_rsd_plot(object1,
                           object2,
                           rsd_cutoff = 30,
                           title = c("QC", "Subject")) +
  ggsci::scale_color_lancet()

massqc_cumulative_rsd_plot(
  object1,
  title = c("QC"),
  color = "red",
  rsd_cutoff = 30
)
massqc_cumulative_rsd_plot(
  object2,
  title = c("Subject"),
  color = "blue",
  rsd_cutoff = 50
)

tidymass/massqc documentation built on Sept. 13, 2023, 10:31 p.m.