In tidymass/tinytools: All the usefull tools for MS data processing and analysis

knitr::opts_chunk$set(echo = TRUE,
                      comment = "#>")

**Analysis report**

[massqc](https://tidymass.github.io/massqc/) from [tidymass](https://tidymass.github.io/tidymass/) by [Xiaotao Shen](https://www.shenxt.info/)

`r format(Sys.Date())`

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INTRODUCTION

**massqc (version 0.01)**: Created in 2021 by Xiaotao Shen

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PARAMETERS

Table 1: Parameter setting

library(knitr)
load("parameters.rda")
kable(parameters, format = "markdown")

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SAMPLE INFORMATION

load("object.rda")
object

Figure 1: Peak intensity profile.

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MISSING VALUES

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MISSING VALUES IN DATASET

Black is MV.

Figure 2: Missing values in dataset

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MISSING VALUES IN VARIABLES

Figure 3: Missing values in variables

MISSING VALUES IN SAMPLES

Figure 4: Missing values in samples

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RSD DISTRIBUTATION

Figure 5: RSD distributation

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INTENSITY FOR ALL THE VARIABLES

Figure 6: Intensity for all the variables

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SAMPLE CORRELATION

Figure 7: Sample correlation

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PCA score plot

Figure 7: PCA score plot

tidymass/tinytools documentation built on Jan. 2, 2022, 5:18 p.m.