revdep/problems.md
In tidyverse/magrittr: A Forward-Pipe Operator for R
datamaps
- Version: 0.0.3
- Source code: https://github.com/cran/datamaps
- URL: http://datamaps.john-coene.com
- BugReports: https://github.com/JohnCoene/datamaps/issues
- Date/Publication: 2018-05-14 20:20:29 UTC
- Number of recursive dependencies: 48
Run cloud_details(, "datamaps") for more info
Newly broken
-
checking examples ... ERROR
```
...
Name: add_arcs
Title: Add arcs
Aliases: add_arcs
** Examples
states <- data.frame(ori.lon = c(-97.03720, -87.90446),
+ ori.lat = c(32.89595, 41.97960),
+ des.lon = c(-106.60919, -97.66987),
+ des.lat = c(35.04022, 30.19453),
+ strokeColor = c("blue", "red"),
+ arcSharpness = c(2, 1))
states %>%
+ datamaps(scope = "USA", default = "lightgray") %>%
+ add_arcs(ori.lon, ori.lat, des.lon, des.lat, strokeColor)
Error in eval(substitute(origin.lon), data) :
invalid 'envir' argument of type 'closure'
Calls: %>% -> add_arcs -> eval
Execution halted
```
rcrtan
- Version: 0.1.1
- Source code: https://github.com/cran/rcrtan
- URL: https://github.com/gtlaflair/rcrtan
- BugReports: https://github.com/gtlaflair/rcrtan/issues
- Date/Publication: 2018-12-19 08:20:03 UTC
- Number of recursive dependencies: 39
Run cloud_details(, "rcrtan") for more info
Newly broken
-
checking examples ... ERROR
```
Running examples in ‘rcrtan-Ex.R’ failed
The error most likely occurred in:
Name: crt_iteman
Title: Calculate criterion-referenced item discrimination indices
Aliases: crt_iteman
** Examples
crt_iteman(bh_depend, 2:31, 21, scale = 'raw')
Error in data %>% { : no function to return from, jumping to top level
Calls: crt_iteman -> %>%
Execution halted
```
reproducible
- Version: 1.2.1
- Source code: https://github.com/cran/reproducible
- URL: https://reproducible.predictiveecology.org, https://github.com/PredictiveEcology/reproducible
- BugReports: https://github.com/PredictiveEcology/reproducible/issues
- Date/Publication: 2020-08-18 07:20:36 UTC
- Number of recursive dependencies: 105
Run cloud_details(, "reproducible") for more info
Newly broken
-
checking examples ... ERROR
...
> ### Name: Cache
> ### Title: Cache method that accommodates environments, S4 methods,
> ### Rasters, & nested caching
> ### Aliases: Cache Cache,ANY-method
>
> ### ** Examples
>
> tmpDir <- file.path(tempdir())
>
> # Basic use
> ranNumsA <- Cache(rnorm, 10, 16, cacheRepo = tmpDir)
>
> # All same
> ranNumsB <- Cache(rnorm, 10, 16, cacheRepo = tmpDir) # recovers cached copy
...(Object to retrieve (f11fb1a2880f8060.rds))
loaded cached result from previous rnorm call,
> ranNumsC <- Cache(cacheRepo = tmpDir) %C% rnorm(10, 16) # recovers cached copy
Error in get(x, envir = ns, inherits = FALSE) :
object 'split_chain' not found
Calls: %C% -> getFromNamespace -> get
Execution halted
-
checking tests ... ERROR
```
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
── Skipped tests ──────────────────────────────────────────────────────────────
● No Drive token is not TRUE (5)
● On CRAN (58)
● empty test (6)
● test cloudCache inside Cache -- Not fully written test (1)
══ testthat results ═══════════════════════════════════════════════════════════
ERROR (test-cache.R:550:3): test pipe for Cache
Warning (test-copy.R:8:3): test Copy
Warning (test-prepInputs.R:1803:3): rasters aren't properly resampled
Warning (test-prepInputs.R:1818:3): rasters aren't properly resampled
[ FAIL 1 | WARN 3 | SKIP 70 | PASS 354 ]
Error: Test failures
Execution halted
```
ripe
- Version: 0.1.0
- Source code: https://github.com/cran/ripe
- URL: https://github.com/yonicd/ripe
- BugReports: https://github.com/yonicd/ripe/issues
- Date/Publication: 2019-12-06 10:10:02 UTC
- Number of recursive dependencies: 58
Run cloud_details(, "ripe") for more info
Newly broken
- checking whether package ‘ripe’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/ripe/new/ripe.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘ripe’ ...
** package ‘ripe’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in get("is_pipe", asNamespace("magrittr")) :
object 'is_pipe' not found
Error: unable to load R code in package ‘ripe’
Execution halted
ERROR: lazy loading failed for package ‘ripe’
* removing ‘/tmp/workdir/ripe/new/ripe.Rcheck/ripe’
CRAN
* installing *source* package ‘ripe’ ...
** package ‘ripe’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ripe)
TCIU
- Version: 1.1.0
- Source code: https://github.com/cran/TCIU
- URL: https://github.com/SOCR/TCIU, https://spacekime.org, https://tciu.predictive.space
- BugReports: https://github.com/SOCR/TCIU/issues
- Date/Publication: 2020-09-18 12:00:32 UTC
- Number of recursive dependencies: 189
Run cloud_details(, "TCIU") for more info
Newly broken
- checking whether package ‘TCIU’ can be installed ... WARNING
Found the following significant warnings:
Warning: loading Rplot failed
See ‘/tmp/workdir/TCIU/new/TCIU.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 12.3Mb
sub-directories of 1Mb or more:
doc 11.2Mb
tidytidbits
- Version: 0.2.2
- Source code: https://github.com/cran/tidytidbits
- Date/Publication: 2020-04-15 14:50:02 UTC
- Number of recursive dependencies: 31
Run cloud_details(, "tidytidbits") for more info
Newly broken
-
checking examples ... ERROR
```
...
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
x <- c() # now x exists in the calling env
tibble(a=1, b=2) %>%
+ mutate(b=a+3) %>%
+ interlude(x <- .$b) %>%
+ mutate(a=a+1)
Warning: call_stack() is deprecated as of rlang 0.3.0.
This warning is displayed once per session.
Error in stack[[i + 1]] : subscript out of bounds
Calls: %>% -> mutate -> interlude
Execution halted
```
torch
- Version: 0.1.1
- Source code: https://github.com/cran/torch
- URL: https://torch.mlverse.org/docs, https://github.com/mlverse/torch
- BugReports: https://github.com/mlverse/torch/issues
- Date/Publication: 2020-10-20 21:10:02 UTC
- Number of recursive dependencies: 58
Run cloud_details(, "torch") for more info
Newly broken
- checking whether package ‘torch’ can be installed ... ERROR
Installation failed.
See ‘/tmp/workdir/torch/new/torch.Rcheck/00install.out’ for details.
Newly fixed
- checking installed package size ... NOTE
installed size is 157.6Mb
sub-directories of 1Mb or more:
R 3.1Mb
help 2.8Mb
libs 151.2Mb
Installation
Devel
* installing *source* package ‘torch’ ...
** package ‘torch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autograd.cpp -o autograd.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c contrib.cpp -o contrib.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cuda.cpp -o cuda.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o
In file included from device.cpp:2:
torch_types.h:7: warning: "LANTERN_HOST_HANDLER" redefined
7 | #define LANTERN_HOST_HANDLER lantern_host_handler();
|
In file included from device.cpp:1:
lantern/lantern.h:35: note: this is the location of the previous definition
35 | #define LANTERN_HOST_HANDLER
|
In file included from device.cpp:1:
lantern/lantern.h: In function ‘bool lanternInit(const string&, std::string*)’:
lantern/lantern.h:4097:6: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
4097 | bool lanternInit(const std::string &libPath, std::string *pError)
| ^~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dimname_list.cpp -o dimname_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtype.cpp -o dtype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gen-namespace.cpp -o gen-namespace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c generator.cpp -o generator.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c indexing.cpp -o indexing.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lantern.cpp -o lantern.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.cpp -o layout.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory_format.cpp -o memory_format.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nn_utils_rnn.cpp -o nn_utils_rnn.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qscheme.cpp -o qscheme.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quantization.cpp -o quantization.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reduction.cpp -o reduction.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c save.cpp -o save.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scalar.cpp -o scalar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c storage.cpp -o storage.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor.cpp -o tensor.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_list.cpp -o tensor_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_options.cpp -o tensor_options.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c variable_list.cpp -o variable_list.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o torch.so RcppExports.o autograd.o contrib.o cuda.o device.o dimname_list.o dtype.o gen-namespace.o generator.o indexing.o lantern.o layout.o memory_format.o nn_utils_rnn.o qscheme.o quantization.o reduction.o save.o scalar.o storage.o tensor.o tensor_list.o tensor_options.o utils.o variable_list.o -L/usr/lib/R/lib -lR
Renaming torch lib to torchpkg
"/usr/lib/R/bin/Rscript" "../tools/renamelib.R"
installing to /tmp/workdir/torch/new/torch.Rcheck/00LOCK-torch/00new/torch/libs
** R
Warning in dir.create(outCodeDir) :
cannot create dir '/tmp/workdir/torch/new/torch.Rcheck/00LOCK-torch/00new/torch/R', reason 'No space left on device'
Error in .install_package_code_files(".", instdir) :
cannot open directory '/tmp/workdir/torch/new/torch.Rcheck/00LOCK-torch/00new/torch/R'
ERROR: unable to collate and parse R files for package ‘torch’
* removing ‘/tmp/workdir/torch/new/torch.Rcheck/torch’
CRAN
* installing *source* package ‘torch’ ...
** package ‘torch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autograd.cpp -o autograd.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c contrib.cpp -o contrib.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cuda.cpp -o cuda.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o
In file included from device.cpp:2:
torch_types.h:7: warning: "LANTERN_HOST_HANDLER" redefined
7 | #define LANTERN_HOST_HANDLER lantern_host_handler();
|
In file included from device.cpp:1:
lantern/lantern.h:35: note: this is the location of the previous definition
35 | #define LANTERN_HOST_HANDLER
|
In file included from device.cpp:1:
lantern/lantern.h: In function ‘bool lanternInit(const string&, std::string*)’:
lantern/lantern.h:4097:6: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
4097 | bool lanternInit(const std::string &libPath, std::string *pError)
| ^~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dimname_list.cpp -o dimname_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtype.cpp -o dtype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gen-namespace.cpp -o gen-namespace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c generator.cpp -o generator.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c indexing.cpp -o indexing.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lantern.cpp -o lantern.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.cpp -o layout.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory_format.cpp -o memory_format.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nn_utils_rnn.cpp -o nn_utils_rnn.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qscheme.cpp -o qscheme.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quantization.cpp -o quantization.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reduction.cpp -o reduction.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c save.cpp -o save.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scalar.cpp -o scalar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c storage.cpp -o storage.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor.cpp -o tensor.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_list.cpp -o tensor_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_options.cpp -o tensor_options.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c variable_list.cpp -o variable_list.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o torch.so RcppExports.o autograd.o contrib.o cuda.o device.o dimname_list.o dtype.o gen-namespace.o generator.o indexing.o lantern.o layout.o memory_format.o nn_utils_rnn.o qscheme.o quantization.o reduction.o save.o scalar.o storage.o tensor.o tensor_list.o tensor_options.o utils.o variable_list.o -L/usr/lib/R/lib -lR
Renaming torch lib to torchpkg
"/usr/lib/R/bin/Rscript" "../tools/renamelib.R"
installing to /tmp/workdir/torch/old/torch.Rcheck/00LOCK-torch/00new/torch/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (torch)
tidyverse/magrittr documentation built on March 9, 2023, 2 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
datamaps
- Version: 0.0.3
- Source code: https://github.com/cran/datamaps
- URL: http://datamaps.john-coene.com
- BugReports: https://github.com/JohnCoene/datamaps/issues
- Date/Publication: 2018-05-14 20:20:29 UTC
- Number of recursive dependencies: 48
Run cloud_details(, "datamaps") for more info
Newly broken
-
checking examples ... ERROR ``` ...
Name: add_arcs
Title: Add arcs
Aliases: add_arcs
** Examples
states <- data.frame(ori.lon = c(-97.03720, -87.90446), + ori.lat = c(32.89595, 41.97960), + des.lon = c(-106.60919, -97.66987), + des.lat = c(35.04022, 30.19453), + strokeColor = c("blue", "red"), + arcSharpness = c(2, 1))
states %>% + datamaps(scope = "USA", default = "lightgray") %>% + add_arcs(ori.lon, ori.lat, des.lon, des.lat, strokeColor) Error in eval(substitute(origin.lon), data) : invalid 'envir' argument of type 'closure' Calls: %>% -> add_arcs -> eval Execution halted ```
rcrtan
- Version: 0.1.1
- Source code: https://github.com/cran/rcrtan
- URL: https://github.com/gtlaflair/rcrtan
- BugReports: https://github.com/gtlaflair/rcrtan/issues
- Date/Publication: 2018-12-19 08:20:03 UTC
- Number of recursive dependencies: 39
Run cloud_details(, "rcrtan") for more info
Newly broken
-
checking examples ... ERROR ``` Running examples in ‘rcrtan-Ex.R’ failed The error most likely occurred in:
Name: crt_iteman
Title: Calculate criterion-referenced item discrimination indices
Aliases: crt_iteman
** Examples
crt_iteman(bh_depend, 2:31, 21, scale = 'raw') Error in data %>% { : no function to return from, jumping to top level Calls: crt_iteman -> %>% Execution halted ```
reproducible
- Version: 1.2.1
- Source code: https://github.com/cran/reproducible
- URL: https://reproducible.predictiveecology.org, https://github.com/PredictiveEcology/reproducible
- BugReports: https://github.com/PredictiveEcology/reproducible/issues
- Date/Publication: 2020-08-18 07:20:36 UTC
- Number of recursive dependencies: 105
Run cloud_details(, "reproducible") for more info
Newly broken
-
checking examples ... ERROR
... > ### Name: Cache > ### Title: Cache method that accommodates environments, S4 methods, > ### Rasters, & nested caching > ### Aliases: Cache Cache,ANY-method > > ### ** Examples > > tmpDir <- file.path(tempdir()) > > # Basic use > ranNumsA <- Cache(rnorm, 10, 16, cacheRepo = tmpDir) > > # All same > ranNumsB <- Cache(rnorm, 10, 16, cacheRepo = tmpDir) # recovers cached copy ...(Object to retrieve (f11fb1a2880f8060.rds)) loaded cached result from previous rnorm call, > ranNumsC <- Cache(cacheRepo = tmpDir) %C% rnorm(10, 16) # recovers cached copy Error in get(x, envir = ns, inherits = FALSE) : object 'split_chain' not found Calls: %C% -> getFromNamespace -> get Execution halted -
checking tests ... ERROR ``` Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Last 13 lines of output: ── Skipped tests ────────────────────────────────────────────────────────────── ● No Drive token is not TRUE (5) ● On CRAN (58) ● empty test (6) ● test cloudCache inside Cache -- Not fully written test (1)
══ testthat results ═══════════════════════════════════════════════════════════ ERROR (test-cache.R:550:3): test pipe for Cache Warning (test-copy.R:8:3): test Copy Warning (test-prepInputs.R:1803:3): rasters aren't properly resampled Warning (test-prepInputs.R:1818:3): rasters aren't properly resampled
[ FAIL 1 | WARN 3 | SKIP 70 | PASS 354 ] Error: Test failures Execution halted ```
ripe
- Version: 0.1.0
- Source code: https://github.com/cran/ripe
- URL: https://github.com/yonicd/ripe
- BugReports: https://github.com/yonicd/ripe/issues
- Date/Publication: 2019-12-06 10:10:02 UTC
- Number of recursive dependencies: 58
Run cloud_details(, "ripe") for more info
Newly broken
- checking whether package ‘ripe’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/ripe/new/ripe.Rcheck/00install.out’ for details.
Installation
Devel
* installing *source* package ‘ripe’ ...
** package ‘ripe’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in get("is_pipe", asNamespace("magrittr")) :
object 'is_pipe' not found
Error: unable to load R code in package ‘ripe’
Execution halted
ERROR: lazy loading failed for package ‘ripe’
* removing ‘/tmp/workdir/ripe/new/ripe.Rcheck/ripe’
CRAN
* installing *source* package ‘ripe’ ...
** package ‘ripe’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ripe)
TCIU
- Version: 1.1.0
- Source code: https://github.com/cran/TCIU
- URL: https://github.com/SOCR/TCIU, https://spacekime.org, https://tciu.predictive.space
- BugReports: https://github.com/SOCR/TCIU/issues
- Date/Publication: 2020-09-18 12:00:32 UTC
- Number of recursive dependencies: 189
Run cloud_details(, "TCIU") for more info
Newly broken
- checking whether package ‘TCIU’ can be installed ... WARNING
Found the following significant warnings: Warning: loading Rplot failed See ‘/tmp/workdir/TCIU/new/TCIU.Rcheck/00install.out’ for details.
In both
- checking installed package size ... NOTE
installed size is 12.3Mb sub-directories of 1Mb or more: doc 11.2Mb
tidytidbits
- Version: 0.2.2
- Source code: https://github.com/cran/tidytidbits
- Date/Publication: 2020-04-15 14:50:02 UTC
- Number of recursive dependencies: 31
Run cloud_details(, "tidytidbits") for more info
Newly broken
-
checking examples ... ERROR ``` ...
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lagThe following objects are masked from ‘package:base’:
intersect, setdiff, setequal, unionx <- c() # now x exists in the calling env tibble(a=1, b=2) %>% + mutate(b=a+3) %>% + interlude(x <- .$b) %>% + mutate(a=a+1) Warning:
call_stack()is deprecated as of rlang 0.3.0. This warning is displayed once per session. Error in stack[[i + 1]] : subscript out of bounds Calls: %>% -> mutate -> interlude Execution halted ```
torch
- Version: 0.1.1
- Source code: https://github.com/cran/torch
- URL: https://torch.mlverse.org/docs, https://github.com/mlverse/torch
- BugReports: https://github.com/mlverse/torch/issues
- Date/Publication: 2020-10-20 21:10:02 UTC
- Number of recursive dependencies: 58
Run cloud_details(, "torch") for more info
Newly broken
- checking whether package ‘torch’ can be installed ... ERROR
Installation failed. See ‘/tmp/workdir/torch/new/torch.Rcheck/00install.out’ for details.
Newly fixed
- checking installed package size ... NOTE
installed size is 157.6Mb sub-directories of 1Mb or more: R 3.1Mb help 2.8Mb libs 151.2Mb
Installation
Devel
* installing *source* package ‘torch’ ...
** package ‘torch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autograd.cpp -o autograd.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c contrib.cpp -o contrib.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cuda.cpp -o cuda.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o
In file included from device.cpp:2:
torch_types.h:7: warning: "LANTERN_HOST_HANDLER" redefined
7 | #define LANTERN_HOST_HANDLER lantern_host_handler();
|
In file included from device.cpp:1:
lantern/lantern.h:35: note: this is the location of the previous definition
35 | #define LANTERN_HOST_HANDLER
|
In file included from device.cpp:1:
lantern/lantern.h: In function ‘bool lanternInit(const string&, std::string*)’:
lantern/lantern.h:4097:6: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
4097 | bool lanternInit(const std::string &libPath, std::string *pError)
| ^~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dimname_list.cpp -o dimname_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtype.cpp -o dtype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gen-namespace.cpp -o gen-namespace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c generator.cpp -o generator.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c indexing.cpp -o indexing.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lantern.cpp -o lantern.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.cpp -o layout.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory_format.cpp -o memory_format.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nn_utils_rnn.cpp -o nn_utils_rnn.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qscheme.cpp -o qscheme.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quantization.cpp -o quantization.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reduction.cpp -o reduction.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c save.cpp -o save.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scalar.cpp -o scalar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c storage.cpp -o storage.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor.cpp -o tensor.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_list.cpp -o tensor_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_options.cpp -o tensor_options.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c variable_list.cpp -o variable_list.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o torch.so RcppExports.o autograd.o contrib.o cuda.o device.o dimname_list.o dtype.o gen-namespace.o generator.o indexing.o lantern.o layout.o memory_format.o nn_utils_rnn.o qscheme.o quantization.o reduction.o save.o scalar.o storage.o tensor.o tensor_list.o tensor_options.o utils.o variable_list.o -L/usr/lib/R/lib -lR
Renaming torch lib to torchpkg
"/usr/lib/R/bin/Rscript" "../tools/renamelib.R"
installing to /tmp/workdir/torch/new/torch.Rcheck/00LOCK-torch/00new/torch/libs
** R
Warning in dir.create(outCodeDir) :
cannot create dir '/tmp/workdir/torch/new/torch.Rcheck/00LOCK-torch/00new/torch/R', reason 'No space left on device'
Error in .install_package_code_files(".", instdir) :
cannot open directory '/tmp/workdir/torch/new/torch.Rcheck/00LOCK-torch/00new/torch/R'
ERROR: unable to collate and parse R files for package ‘torch’
* removing ‘/tmp/workdir/torch/new/torch.Rcheck/torch’
CRAN
* installing *source* package ‘torch’ ...
** package ‘torch’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c autograd.cpp -o autograd.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c contrib.cpp -o contrib.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cuda.cpp -o cuda.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c device.cpp -o device.o
In file included from device.cpp:2:
torch_types.h:7: warning: "LANTERN_HOST_HANDLER" redefined
7 | #define LANTERN_HOST_HANDLER lantern_host_handler();
|
In file included from device.cpp:1:
lantern/lantern.h:35: note: this is the location of the previous definition
35 | #define LANTERN_HOST_HANDLER
|
In file included from device.cpp:1:
lantern/lantern.h: In function ‘bool lanternInit(const string&, std::string*)’:
lantern/lantern.h:4097:6: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
4097 | bool lanternInit(const std::string &libPath, std::string *pError)
| ^~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dimname_list.cpp -o dimname_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dtype.cpp -o dtype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gen-namespace.cpp -o gen-namespace.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c generator.cpp -o generator.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c indexing.cpp -o indexing.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lantern.cpp -o lantern.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.cpp -o layout.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory_format.cpp -o memory_format.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nn_utils_rnn.cpp -o nn_utils_rnn.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qscheme.cpp -o qscheme.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c quantization.cpp -o quantization.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reduction.cpp -o reduction.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c save.cpp -o save.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scalar.cpp -o scalar.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c storage.cpp -o storage.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor.cpp -o tensor.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_list.cpp -o tensor_list.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tensor_options.cpp -o tensor_options.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-jbaK_j/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c variable_list.cpp -o variable_list.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o torch.so RcppExports.o autograd.o contrib.o cuda.o device.o dimname_list.o dtype.o gen-namespace.o generator.o indexing.o lantern.o layout.o memory_format.o nn_utils_rnn.o qscheme.o quantization.o reduction.o save.o scalar.o storage.o tensor.o tensor_list.o tensor_options.o utils.o variable_list.o -L/usr/lib/R/lib -lR
Renaming torch lib to torchpkg
"/usr/lib/R/bin/Rscript" "../tools/renamelib.R"
installing to /tmp/workdir/torch/old/torch.Rcheck/00LOCK-torch/00new/torch/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (torch)
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