Run revdepcheck::cloud_details(, "admiral")
for more info
Installation failed.
See ‘/tmp/workdir/admiral/new/admiral.Rcheck/00install.out’ for details.
* installing *source* package ‘admiral’ ...
** package ‘admiral’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : 'negate_vars' is not an exported object from 'namespace:admiraldev'
Error: unable to load R code in package ‘admiral’
Execution halted
ERROR: lazy loading failed for package ‘admiral’
* removing ‘/tmp/workdir/admiral/new/admiral.Rcheck/admiral’
* installing *source* package ‘admiral’ ...
** package ‘admiral’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error : 'negate_vars' is not an exported object from 'namespace:admiraldev'
Error: unable to load R code in package ‘admiral’
Execution halted
ERROR: lazy loading failed for package ‘admiral’
* removing ‘/tmp/workdir/admiral/old/admiral.Rcheck/admiral’
Run revdepcheck::cloud_details(, "admiralonco")
for more info
Installation failed.
See ‘/tmp/workdir/admiralonco/new/admiralonco.Rcheck/00install.out’ for details.
* installing *source* package ‘admiralonco’ ...
** package ‘admiralonco’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in namespaceExport(ns, exports) : undefined exports: negate_vars
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace -> namespaceExport
Execution halted
ERROR: lazy loading failed for package ‘admiralonco’
* removing ‘/tmp/workdir/admiralonco/new/admiralonco.Rcheck/admiralonco’
* installing *source* package ‘admiralonco’ ...
** package ‘admiralonco’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in namespaceExport(ns, exports) : undefined exports: negate_vars
Calls: <Anonymous> ... namespaceImportFrom -> asNamespace -> loadNamespace -> namespaceExport
Execution halted
ERROR: lazy loading failed for package ‘admiralonco’
* removing ‘/tmp/workdir/admiralonco/old/admiralonco.Rcheck/admiralonco’
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "genekitr")
for more info
* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genekitr’ version ‘1.0.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genekitr’ version ‘1.0.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "ggPMX")
for more info
* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘ggPMX/DESCRIPTION’ ... OK
* this is package ‘ggPMX’ version ‘1.2.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
[ FAIL 1 | WARN 13 | SKIP 8 | PASS 327 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 ERROR, 2 NOTEs
* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘ggPMX/DESCRIPTION’ ... OK
* this is package ‘ggPMX’ version ‘1.2.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
[ FAIL 1 | WARN 13 | SKIP 8 | PASS 327 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 ERROR, 2 NOTEs
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "MARVEL")
for more info
* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘MARVEL/DESCRIPTION’ ... OK
* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘MARVEL.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘MARVEL/DESCRIPTION’ ... OK
* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘MARVEL.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
Run revdepcheck::cloud_details(, "numbat")
for more info
* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘numbat/DESCRIPTION’ ... OK
* this is package ‘numbat’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'ggtree', 'scistreer'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘numbat/DESCRIPTION’ ... OK
* this is package ‘numbat’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'ggtree', 'scistreer'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "OlinkAnalyze")
for more info
* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OlinkAnalyze’ version ‘3.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘Vignett.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OlinkAnalyze’ version ‘3.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... OK
Running ‘testthat.R’
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘Vignett.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
Run revdepcheck::cloud_details(, "Platypus")
for more info
* using log directory ‘/tmp/workdir/Platypus/new/Platypus.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Platypus/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Platypus’ version ‘3.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking package dependencies ... ERROR
Package required but not available: ‘ggtree’
Packages suggested but not available for checking:
'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/Platypus/old/Platypus.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘Platypus/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Platypus’ version ‘3.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking package dependencies ... ERROR
Package required but not available: ‘ggtree’
Packages suggested but not available for checking:
'Matrix.utils', 'monocle3', 'ProjecTILs', 'SeuratWrappers'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "RVA")
for more info
* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RVA/DESCRIPTION’ ... OK
* this is package ‘RVA’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘RVA/DESCRIPTION’ ... OK
* this is package ‘RVA’ version ‘0.0.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "tidySEM")
for more info
* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘tidySEM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidySEM’ version ‘0.2.3’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘Generating_syntax.Rmd’ using ‘UTF-8’... OK
‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
‘sem_graph.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘tidySEM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidySEM’ version ‘0.2.3’
* package encoding: UTF-8
* checking package namespace information ... OK
...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
‘Generating_syntax.Rmd’ using ‘UTF-8’... OK
‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
‘sem_graph.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 1 NOTE
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "tinyarray")
for more info
* using log directory ‘/tmp/workdir/tinyarray/new/tinyarray.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘tinyarray/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tinyarray’ version ‘2.2.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/tinyarray/old/tinyarray.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘tinyarray/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tinyarray’ version ‘2.2.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
Run revdepcheck::cloud_details(, "NA")
for more info
Run revdepcheck::cloud_details(, "xpose.nlmixr2")
for more info
* using log directory ‘/tmp/workdir/xpose.nlmixr2/new/xpose.nlmixr2.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘xpose.nlmixr2’ version ‘0.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘nlmixr2est’
Package suggested but not available for checking: ‘nlmixr2’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
* using log directory ‘/tmp/workdir/xpose.nlmixr2/old/xpose.nlmixr2.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
* checking for file ‘xpose.nlmixr2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘xpose.nlmixr2’ version ‘0.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘nlmixr2est’
Package suggested but not available for checking: ‘nlmixr2’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
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