Run revdepcheck::cloud_details(, "cmcR")
for more info
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
ℹ Please use
"highCMCClassif"instead of
.data$highCMCClassif`
══ Failed ══════════════════════════════════════════════════════════════════════
── 1. Error ('test-diagnosticTools.R:55'): (code run outside of test_that()
) ─
Error in stringr::str_extract_all(., string = ..2$cmcR.info$cellRange,
pattern = "[0-9]{1,}")
: simplify
must be TRUE
or FALSE
, not the string "rows: 1 - 69, cols: 1 - 69".
Backtrace:
1. cmcR::cmcPlot(...)
at test-diagnosticTools.R:55:0
8. stringr::str_extract_all(simplify = .)
══ DONE ════════════════════════════════════════════════════════════════════════ Keep trying! Error: Test failures Execution halted ```
Run revdepcheck::cloud_details(, "crispRdesignR")
for more info
checking examples ... ERROR ``` Running examples in ‘crispRdesignR-Ex.R’ failed The error most likely occurred in:
Name: getofftargetdata
Title: Off Target Data Frame Creation
Aliases: getofftargetdata
** Examples
... Backtrace: ▆ 1. ├─crispRdesignR::sgRNA_design(testseq, usergenome, gtfname, calloffs = FALSE) 2. │ └─stringr::str_replace_all(revsetPAM, "N", ".") 3. │ └─stringr:::check_lengths(string, pattern, replacement) 4. │ └─vctrs::vec_size_common(...) 5. └─vctrs:::stop_scalar_type(...) 6. └─vctrs:::stop_vctrs(...) 7. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call)) Execution halted ```
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘DT’ ‘gbm’
All declared Imports should be used.
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
Run revdepcheck::cloud_details(, "cspp")
for more info
checking examples ... ERROR ``` Running examples in ‘cspp-Ex.R’ failed The error most likely occurred in:
Name: get_cspp_data
Title: Load CSPP data into the R environment
Aliases: get_cspp_data
** Examples
... 12. ├─dplyr:::filter.data.frame(., stringr::str_detect(.data$category, cats)) 13. │ └─dplyr:::filter_rows(.data, ..., caller_env = caller_env()) 14. │ └─dplyr:::filter_eval(dots, mask = mask, error_call = error_call) 15. │ ├─base::withCallingHandlers(...) 16. │ └─mask$eval_all_filter(dots, env_filter) 17. └─stringr::str_detect(.data$category, cats) 18. └─stringr:::no_empty() 19. └─cli::cli_abort(...) 20. └─rlang::abort(...) Execution halted ```
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘cspp-vignette.Rmd’ using rmarkdown Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
...
vars).
Caused by error in
stringr::str_detect():
!
patterncan't be the empty string (
""`).
--- failed re-building ‘cspp-vignette.Rmd’
SUMMARY: processing the following file failed: ‘cspp-vignette.Rmd’
Error: Vignette re-building failed. Execution halted ```
Run revdepcheck::cloud_details(, "flair")
for more info
checking examples ... ERROR ``` Running examples in ‘flair-Ex.R’ failed The error most likely occurred in:
Name: decorate_code
Title: Creates an object of the class 'with_flair'
Aliases: decorate_code
** Examples
... 8. │ └─flair:::flair_rx.default(...) 9. │ └─... %>% unlist() 10. ├─base::unlist(.) 11. ├─stringr::str_extract_all(., "(\<[^\<\>]\>)|((?<=\>|^)([^\<]|(\<(?=(\-|\<))))(?=\<|$))") 12. │ └─stringr:::check_lengths(string, pattern) 13. │ └─vctrs::vec_size_common(...) 14. └─vctrs:::stop_scalar_type(
<fn>
(<source>
), "string",<env>
) 15. └─vctrs:::stop_vctrs(...) 16. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call)) Execution halted ```
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 2. ├─flair:::flair_lines.with_flair(test_wf, c(2:4)) 3. │ └─... %>% map2(1:sum(where_sources), ~ 0:.x + .y) 4. ├─purrr::map2(., 1:sum(where_sources), ~0:.x + .y) 5. ├─purrr::map(., ~str_count(.x, "\n|()")) 6. │ └─flair (local) .f(.x[[i]], ...) 7. │ └─stringr::str_count(.x, "\n|()") 8. │ └─stringr:::check_lengths(string, pattern) 9. │ └─vctrs::vec_size_common(...)
<fn>
(<source>
), "string", <env>
)[ FAIL 2 | WARN 0 | SKIP 0 | PASS 5 ] Error: Test failures Execution halted ```
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: ... --- re-building ‘how_to_flair.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
...
Quitting from lines 32-43 (how_to_flair.Rmd)
Error: processing vignette 'how_to_flair.Rmd' failed with diagnostics:
string
must be a vector, not a object.
--- failed re-building ‘how_to_flair.Rmd’
SUMMARY: processing the following file failed: ‘how_to_flair.Rmd’
Error: Vignette re-building failed. Execution halted ```
checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘dplyr’ ‘evaluate’ ‘ggplot2’
All declared Imports should be used.
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
Run revdepcheck::cloud_details(, "GetLattesData")
for more info
checking examples ... ERROR ``` Running examples in ‘GetLattesData-Ex.R’ failed The error most likely occurred in:
Name: gld_get_lattes_data_from_zip
Title: Reads zip files from Lattes
Aliases: gld_get_lattes_data_from_zip
** Examples
... 2. ├─base::unlist(...) 3. └─base::sapply(...) 4. └─base::lapply(X = X, FUN = FUN, ...) 5. └─GetLattesData (local) FUN(X[[i]], ...) 6. ├─base::which(stringr::str_detect(df.sjr$Issn, issn.in)) 7. └─stringr::str_detect(df.sjr$Issn, issn.in) 8. └─stringr:::no_empty() 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) Execution halted ```
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ▆ 1. └─GetLattesData::gld_get_lattes_data_from_zip(c(f_1, f_2)) at test_gld.R:9:2 2. ├─base::unlist(...) 3. └─base::sapply(...) 4. └─base::lapply(X = X, FUN = FUN, ...) 5. └─GetLattesData (local) FUN(X[[i]], ...) 6. ├─base::which(stringr::str_detect(df.sjr$Issn, issn.in)) 7. └─stringr::str_detect(df.sjr$Issn, issn.in) 8. └─stringr:::no_empty() 9. └─cli::cli_abort(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted ```
checking re-building of vignette outputs ... WARNING
``
Error(s) in re-building vignettes:
...
--- re-building ‘gld_vignette-ReadLattes.Rmd’ using rmarkdown
Quitting from lines 31-44 (gld_vignette-ReadLattes.Rmd)
Error: processing vignette 'gld_vignette-ReadLattes.Rmd' failed with diagnostics:
patterncan't be the empty string (
""`).
--- failed re-building ‘gld_vignette-ReadLattes.Rmd’
SUMMARY: processing the following file failed: ‘gld_vignette-ReadLattes.Rmd’
Error: Vignette re-building failed. Execution halted ```
Run revdepcheck::cloud_details(, "glmmPen")
for more info
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. ├─glmmPen::glmmPen(...) 7. │ └─glmmPen:::fD_adj(out = fD_out0) 8. │ └─stringr::str_c(rep(cnms, each = d), ":", levels(group)) 9. │ └─vctrs::vec_size_common(!!!dots)
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 6 ] Error: Test failures Execution halted ```
checking installed package size ... NOTE
installed size is 103.2Mb
sub-directories of 1Mb or more:
libs 102.2Mb
checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘rstantools’
All declared Imports should be used.
Run revdepcheck::cloud_details(, "mpwR")
for more info
checking examples ... ERROR ``` Running examples in ‘mpwR-Ex.R’ failed The error most likely occurred in:
Name: get_Upset_list
Title: Generate Upset list
Aliases: get_Upset_list
** Examples
Load libraries
... !
pattern
can't be the empty string (""
). Backtrace: ▆ 1. └─mpwR::get_Upset_list(input_list = data, level = "Precursor.IDs") 2. ├─base::which(...) 3. └─stringr::str_detect(string = names(output_list), pattern = "") 4. └─stringr:::no_empty() 5. └─cli::cli_abort(...) 6. └─rlang::abort(...) Execution halted ```
checking tests ... ERROR
``
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_Upset.R:72'): get_Upset_list works ─────────────────────────────
Error in
stringr::str_detect(string = names(output_list), pattern = ""):
patterncan't be the empty string (
""`).
Backtrace:
▆
[ FAIL 1 | WARN 553 | SKIP 0 | PASS 598 ] Error: Test failures Execution halted ```
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: --- re-building ‘Import.Rmd’ using rmarkdown --- finished re-building ‘Import.Rmd’
--- re-building ‘Requirements.Rmd’ using rmarkdown --- finished re-building ‘Requirements.Rmd’
--- re-building ‘Workflow.Rmd’ using rmarkdown
Attaching package: 'dplyr'
...
Quitting from lines 225-226 (Workflow.Rmd)
Error: processing vignette 'Workflow.Rmd' failed with diagnostics:
pattern
can't be the empty string (""
).
--- failed re-building ‘Workflow.Rmd’
SUMMARY: processing the following file failed: ‘Workflow.Rmd’
Error: Vignette re-building failed. Execution halted ```
Run revdepcheck::cloud_details(, "postpack")
for more info
checking examples ... ERROR ``` Running examples in ‘postpack-Ex.R’ failed The error most likely occurred in:
Name: match_params
Title: Find matching node names
Aliases: match_params
** Examples
load example mcmc.list
... Backtrace: ▆ 1. └─postpack::match_params(cjs, "") 2. └─base::lapply(...) 3. └─postpack (local) FUN(X[[i]], ...) 4. └─stringr::str_detect(all_params, x) 5. └─stringr:::no_empty() 6. └─cli::cli_abort(...) 7. └─rlang::abort(...) Execution halted ```
checking re-building of vignette outputs ... WARNING ``` Error(s) in re-building vignettes: ... --- re-building ‘example-mcmclists.Rmd’ using rmarkdown --- finished re-building ‘example-mcmclists.Rmd’
--- re-building ‘feature-overview.Rmd’ using rmarkdown Node(s) discarded: "SIG[1,1]", "SIG[2,1]", "SIG[1,2]", and "SIG[2,2]" Node(s) discarded: "SIG[2,1]" ... --- failed re-building ‘multiple-models.Rmd’
--- re-building ‘pattern-matching.Rmd’ using rmarkdown --- finished re-building ‘pattern-matching.Rmd’
SUMMARY: processing the following file failed: ‘multiple-models.Rmd’
Error: Vignette re-building failed. Execution halted ```
Packages unavailable to check Rd xrefs: ‘rstan’, ‘R2WinBUGS’, ‘R2jags’, ‘R2OpenBUGS’, ‘nimble’, ‘rjags’, ‘jagsUI’
Run revdepcheck::cloud_details(, "repr")
for more info
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Backtrace: ▆
expect_match(r, "<meta charset=\"utf-8\">\n\t\t<script", fixed = TRUE,
all = FALSE)
: is.character(act$val) is not TRUE
Backtrace:
▆[ FAIL 3 | WARN 0 | SKIP 0 | PASS 127 ] Error: Test failures Execution halted ```
checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
'data.table', 'vegalite', 'plotly', 'geojsonio'
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘geojsonio’, ‘plotly’, ‘vegalite’
Run revdepcheck::cloud_details(, "tidyfst")
for more info
checking examples ... ERROR ``` Running examples in ‘tidyfst-Ex.R’ failed The error most likely occurred in:
Name: unite_dt
Title: Unite multiple columns into one by pasting strings together
Aliases: unite_dt
** Examples
df <- expand.grid(x = c("a", NA), y = c("b", NA)) ... 2. ├─tidyfst::unite_dt(., "merged_name", "") 3. │ └─dt %>% select_dt(...) 4. ├─tidyfst::select_dt(., ...) 5. │ └─... %>% str_c(collapse = ",") 6. ├─stringr::str_c(., collapse = ",") 7. └─stringr::str_subset(names(dt), ., negate = negate) 8. └─stringr:::no_empty() 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) Execution halted ```
Packages unavailable to check Rd xrefs: ‘fastDummies’, ‘widyr’, ‘pacman’, ‘sjmisc’
Run revdepcheck::cloud_details(, "tidyft")
for more info
checking examples ... ERROR ``` Running examples in ‘tidyft-Ex.R’ failed The error most likely occurred in:
Name: unite
Title: Unite multiple columns into one by pasting strings together
Aliases: unite
** Examples
df <- CJ(x = c("a", NA), y = c("b", NA)) ... 2. ├─tidyft::unite(., "merged_name", "") 3. │ └─dt %>% select_dt(...) 4. ├─tidyft::select_dt(., ...) 5. │ └─... %>% str_c(collapse = ",") 6. ├─stringr::str_c(., collapse = ",") 7. └─stringr::str_subset(names(dt), ., negate = negate) 8. └─stringr:::no_empty() 9. └─cli::cli_abort(...) 10. └─rlang::abort(...) Execution halted ```
checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘tidyfst’, ‘tidyr’, ‘fastDummies’
checking LazyData ... NOTE
'LazyData' is specified without a 'data' directory
Run revdepcheck::cloud_details(, "zipangu")
for more info
checking examples ... ERROR ``` Running examples in ‘zipangu-Ex.R’ failed The error most likely occurred in:
Name: kansuji2arabic
Title: Convert kansuji character to arabic
Aliases: kansuji2arabic kansuji2arabic_all kansuji2arabic_num
kansuji2arabic_str
** Examples
... 1. ├─zipangu::kansuji2arabic_str("金一億二千三百四十五万円") 2. │ ├─... %>% unlist() 3. │ └─purrr::map(...) 4. │ └─zipangu (local) .f(.x[[i]], ...) 5. │ └─stringr::str_detect(doc_cha[i], pattern = "") 6. │ └─stringr:::no_empty() 7. │ └─cli::cli_abort(...) 8. │ └─rlang::abort(...) 9. └─base::unlist(.) Execution halted ```
checking tests ... ERROR ``` Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─zipangu::kansuji2arabic_str("金一億二千三百四十五万六千七百八十九円") 5. │ ├─... %>% unlist() 6. │ └─purrr::map(...) 7. │ └─zipangu (local) .f(.x[[i]], ...) 8. │ └─stringr::str_detect(doc_cha[i], pattern = "") 9. │ └─stringr:::no_empty()
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 142 ] Error: Test failures Execution halted ```
Note: found 47 marked UTF-8 strings
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