Man pages for timothy-barry/sceptre
Analysis of Single-Cell CRISPR Screen Data

assign_grnasAssign gRNAs to cells
construct_cis_pairsConstruct _cis_ pairs
construct_positive_control_pairsConstruct positive control pairs
construct_trans_pairsConstruct _trans_ pairs
gene_position_data_frame_grch38Gene position data frames
get_grna_assignmentsGet gRNA assignments
get_response_matrixData getter functions
get_resultGet result
import_dataImport data
import_data_from_cellrangerImport data from Cell Ranger
import_data_from_parseImport data from Parse (experimental)
plot_assign_grnasPlot assign gRNAs
plot_covariatesPlot covariates
plot_grna_count_distributionsPlot gRNA count distributions
plot_response_grna_target_pairPlot response-gRNA-target pair
plot_run_calibration_checkPlot run calibration check
plot_run_discovery_analysisPlot run discovery analysis
plot_run_power_checkPlot run power check
plot_run_qcPlot run QC
plot-sceptre_object-methodPlot
print-sceptre_object-methodPrint
read_ondisc_backed_sceptre_objectWrite or read an 'ondisc'-backed 'sceptre_object'
run_calibration_checkRun calibration check
run_discovery_analysisRun discovery analysis
run_power_checkRun power check
run_qcRun QC
sceptre-packagesceptre
set_analysis_parametersSet analysis parameters
write_outputs_to_directoryWrite outputs to directory
timothy-barry/sceptre documentation built on Sept. 27, 2024, 6:49 a.m.