API for timydaley/CRISPhieRmix
A tool for identifying interesting genes in large pooled CRISPRi and CRISPRa screen using hierarchical mixture models
| Global functions | |
|---|---|
| CRISPhieRmix | Man page Source code |
| LogSumWeightedAverage | Source code |
| Rosenbluh2017CRISPRiSim | Man page |
| f | Source code |
| f_grad | Source code |
| fitNegCtrl | Source code |
| gaussQuadGeneExpectation2Groups | Source code |
| gaussQuadGeneExpectation3Groups | Source code |
| geneExpectations2Group | Source code |
| integratedExpectation2groups | Source code |
| integratedExpectation3groups | Source code |
| logL | Source code |
| logL_mu_deriv | Source code |
| logL_p_deriv | Source code |
| logL_sigma_deriv | Source code |
| logSumLogVec | Source code |
| setBimodalParams | Source code |
| skewt2compLogLike | Source code |
| skewt3compLogLike | Source code |
| skewtEM2comp | Source code |
| skewtEM3comp | Source code |
| skewtMixExpectationStep2comp | Source code |
| skewtMixExpectationStep3comp | Source code |
| skewtMixMaxStep2comp | Source code |
| skewtMixMaxStep3comp | Source code |
