prs_calc: Calculate Polygenic Risk Score
In timyers/ImPRS: Calculate Polygenic Risk Scores (PRS)
Description
Usage
Arguments
Value
Examples
Description
Calculate Polygenic Risk Score
Usage
1
Arguments
base_file
path and file name to summary statistics
base_header
a logical value indicating whether the first row of base_file contains column names, default is TRUE.
target_bed
path and file name to plink's .bed individual-level genotype-phenotype
file, .bim and .fam files must also be located in the same directory with the same file name,
prefix, e.g. EUR.bed, EUR.bim, EUR.fam.
Value
a numeric
Examples
1
prs_calc(base_file = "./data/extdat/Height.QC.Transformed", target_bed = "./inst/extdat/EUR.QC.bed")
timyers/ImPRS documentation built on Oct. 6, 2020, 6:26 p.m.
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Description Usage Arguments Value Examples
Description
Calculate Polygenic Risk Score
Usage
1 |
Arguments
base_file |
path and file name to summary statistics |
base_header |
a logical value indicating whether the first row of base_file contains column names, default is TRUE. |
target_bed |
path and file name to plink's .bed individual-level genotype-phenotype file, .bim and .fam files must also be located in the same directory with the same file name, prefix, e.g. EUR.bed, EUR.bim, EUR.fam. |
Value
a numeric
Examples
1 | prs_calc(base_file = "./data/extdat/Height.QC.Transformed", target_bed = "./inst/extdat/EUR.QC.bed")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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