revdep/failures.md

In timyers/ldlinkr: Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest

GRaNIE

• Version:
• GitHub: https://github.com/CBIIT/LDlinkR
• Source code: NA
• Number of recursive dependencies: 0

Error before installation

Devel

  There are binary versions available but the source versions are later:
           binary source needs_compilation
digest     0.6.34 0.6.35              TRUE
tidyselect  1.2.0  1.2.1              TRUE

  Binaries will be installed


Error in download.file(url, destfile, method, mode = "wb", ...) : 
  cannot open URL 'https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.3/gridExtra_2.3.tgz'
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.3/gridExtra_2.3.tgz': status was 'SSL connect error'
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.3/gridExtra_2.3.tgz': status was 'SSL connect error'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘gridExtra’ failed
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
...
2: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 0 != reported length 0
3: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/BSgenome.Rnorvegicus.UCSC.rn7_1.4.3.tar.gz': Timeout of 60 seconds was reached
4: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/BSgenome.Rnorvegicus.UCSC.rn7_1.4.3.tar.gz': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘BSgenome.Rnorvegicus.UCSC.rn7’ failed
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘BSgenome.Rnorvegicus.UCSC.rn7’ failed

CRAN

  There are binary versions available but the source versions are later:
           binary source needs_compilation
digest     0.6.34 0.6.35              TRUE
tidyselect  1.2.0  1.2.1              TRUE

  Binaries will be installed


Error in download.file(url, destfile, method, mode = "wb", ...) : 
  cannot open URL 'https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.3/gridExtra_2.3.tgz'
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.3/gridExtra_2.3.tgz': status was 'SSL connect error'
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://cloud.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.3/gridExtra_2.3.tgz': status was 'SSL connect error'
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘gridExtra’ failed
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
...
2: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 0 != reported length 0
3: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/BSgenome.Rnorvegicus.UCSC.rn7_1.4.3.tar.gz': Timeout of 60 seconds was reached
4: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://bioconductor.org/packages/3.18/data/annotation/src/contrib/BSgenome.Rnorvegicus.UCSC.rn7_1.4.3.tar.gz': Timeout of 60 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘BSgenome.Rnorvegicus.UCSC.rn7’ failed
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  download of package ‘BSgenome.Rnorvegicus.UCSC.rn7’ failed

timyers/ldlinkr documentation built on April 17, 2024, 9:57 p.m.