convert_cpdb_pathway_to_mgsa_geneset: Convert the CPDB Pathway Tab Format into MGSA Format

In tinyheero/mgsautils: An R package for working with MGSA Input and Outputs

Description

This function converts the ConsensusPathDB http://consensuspathdb.org/ biological pathways (.tab) into a mgsa geneset object

Usage

convert_cpdb_pathway_to_mgsa_geneset(infile, pathway.id.col = "external_id",
  gene.id.col = "hgnc_symbol_ids")

Arguments

infile	Pathway to the CPDB pathway file
pathway.id.col	Column name of the pathway identifer in the infile
gene.id.col	Column name of the gene identifier in the infile

tinyheero/mgsautils documentation built on May 31, 2019, 3:35 p.m.