count_shm_motifs: Count the Number of Somatic Hypermutation (SHM) Motifs
In tinyheero/shmutils: Utility Functions to Look for Somatic Hypermutation
Description
Usage
Arguments
Value
Description
Counts the number of the SHM motifs within the GenomicRange (gr) object.
Usage
1
count_shm_motifs(gr, bs.genome)
Arguments
gr
GRanges object. There needs to be a id column in the metadata.
So that the number of motifs can be associated with the original
GenomicRange.
BS.genome
This a Biostring-based genome object. (BSgenome from
Bioconductor). For instance, library("BSgenome.Hsapiens.UCSC.hg19")
can be used.
Value
A n x 3 data.frame indicating the original GRanges id, the number
tinyheero/shmutils documentation built on May 31, 2019, 3:36 p.m.
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Description Usage Arguments Value
Description
Counts the number of the SHM motifs within the GenomicRange (gr) object.
Usage
1 | count_shm_motifs(gr, bs.genome)
|
Arguments
gr |
GRanges object. There needs to be a id column in the metadata. So that the number of motifs can be associated with the original GenomicRange. |
BS.genome |
This a Biostring-based genome object. (BSgenome from Bioconductor). For instance, library("BSgenome.Hsapiens.UCSC.hg19") can be used. |
Value
A n x 3 data.frame indicating the original GRanges id, the number
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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