get_gene_titan_seg_overlap: Get Gene Overlaps with TitanCNA segments
In tinyheero/titanCNAutils: An R package for working with TitanCNA Results
Description
Usage
Arguments
Value
Description
Get Gene Overlaps with TitanCNA segments
Usage
1
get_gene_titan_seg_overlap(segs.df, gene.annot.df, overlap.prop = 0.5)
Arguments
segs.df
data.frame of the TitanCNA segs file loaded from
load_titan_seg
gene.annot.df
data.frame of the gene annotations
overlap.prop
Proportion that the TitanCNA segment must overlap with
a gene in order to be considered overlapping. The smaller the value the
more focal the copy number alteration you want to associate with gene
Value
data.frame that contains the overlap of the input gene annotation
with the input segment data.
tinyheero/titanCNAutils documentation built on May 31, 2019, 3:37 p.m.
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Description Usage Arguments Value
Description
Get Gene Overlaps with TitanCNA segments
Usage
1 | get_gene_titan_seg_overlap(segs.df, gene.annot.df, overlap.prop = 0.5)
|
Arguments
segs.df |
data.frame of the TitanCNA segs file loaded from
|
gene.annot.df |
data.frame of the gene annotations |
overlap.prop |
Proportion that the TitanCNA segment must overlap with a gene in order to be considered overlapping. The smaller the value the more focal the copy number alteration you want to associate with gene |
Value
data.frame that contains the overlap of the input gene annotation with the input segment data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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